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Report for Sequence Feature Glyma13g21371

Feature Type:gene_model
Chromosome:Gm13
Start:24852357
stop:24857508
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g21371
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10030AT Annotation by Michelle Graham. TAIR10: aspartate/glutamate/uridylate kinase family protein | chr3:3092277-3094831 REVERSE LENGTH=542 SoyBaseE_val: 0ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
PTHR26059Panther FAMILY NOT NAMED JGI ISS
PTHR26059:SF1Panther SUBFAMILY NOT NAMED JGI ISS
PF00696PFAM Amino acid kinase family JGI ISS
PF10545PFAM Alcohol dehydrogenase transcription factor Myb/SANT-like JGI ISS
UniRef100_A7UQU8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain-like; Uridylate kinase n=1 Tax=Medicago truncatula RepID=A7UQU8_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LZE3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZE3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g21371
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21371 not represented in the dataset
Glyma13g21371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21371
ParalogEvidenceComments
Glyma10g07490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21371 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g149900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g21371
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g21371
>Glyma13g21371.1   sequence type=CDS   gene model=Glyma13g21371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGCGACGACAGCCACCACCACCTCCACCAACCCTACGCGCCGCACCACCACCACTTCTCTCCCTCCGCCGTCGCCGCCTCCGTGCCGCCCAAGCCCGTTGCCGAAGCTGAGGACTTCGCCAACCCCTTCGAAGACGACGACGGTAGCGCCAGCGAGAAGCGCAAGGAGTGCGACGAGATCGGTGAGGGAGCCGCCTCGTACGGATTCAACAACAAGAGATCTAAGGCGACTCCGTCGAACGGCGCCGTGTCCGGCGGCGCCGAGTACCGCAAGGACCGGGAGGAGTGGAGCGACACGGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGCTGAACCGGGGGAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTGAAGAAGAGGTACAAATTGGAGCGGCACAGAATGAGCAGTGGCTGCATTTCCACCAGCCACTGGCCTTGGTTCAAGCAATTGGAGCAGATCGTCGGAAATTCTCTTCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTGGTTTCCGCCGGAACTACTCCCAGGCAATCGAAGAGATATGGAGTGGCAACACCCAGCACTGGAGGTCAAGCAAATAGCATGAAGTCCAAAGCATTCTCAAACAGATGGCGGAGGGTAGTTTTCAAAATTAGTGGGGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTGGCCATGCTAGTTTCAAGAGAAGTTTCCATAGCTTCCCACCTTGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTAGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCACTCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGGGCTTCAGAGCTTAATGCGGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGTTGGGTTCAAGAGGTGTCACCTCTATGGATATGTCAGCGCTGACATTCTGTGAGGAAAATGCCATTCCTGTTGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAGGTTGGCACACTAATTGACCAAACTGGAGCAATAAGCTAA
Predicted protein sequences of Glyma13g21371
>Glyma13g21371.1   sequence type=predicted peptide   gene model=Glyma13g21371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCDDDDDFSLLRDDSHHHLHQPYAPHHHHFSPSAVAASVPPKPVAEAEDFANPFEDDDGSASEKRKECDEIGEGAASYGFNNKRSKATPSNGAVSGGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTTPRQSKRYGVATPSTGGQANSMKSKAFSNRWRRVVFKISGAALTGSDTCNIDPKVAMLVSREVSIASHLGVEVAIVVGGRNFFSGDAWVNATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGTPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS*






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