Glyma13g21310 - SoyBase

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Report for Sequence Feature Glyma13g21310

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24782917
stop:	24786428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36630	AT	Annotation by Michelle Graham. TAIR10: Sulfite exporter TauE/SafE family protein \| chr2:15352767-15355050 REVERSE LENGTH=459	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
PTHR14255	Panther	ATP-DEPENDENT PROTEASE (CEREBLON)	JGI		ISS
PF01925	PFAM	Sulfite exporter TauE/SafE	JGI		ISS
UniRef100_I1LZD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZD4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q75GI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q75GI8_ORYSJ	SoyBase	E_val: 1.00E-173	ISS

Expression Patterns of Glyma13g21310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21310

Paralog	Evidence	Comments
Glyma10g07420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g149100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g21310

Limit To All Plant Sequences

>Glyma13g21310.2   sequence type=transcript   gene model=Glyma13g21310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGTTATACAATTTAATAAATGCACTATGTGGAACACAACAAAACCATATAAACATAAGACAACTTCTTCTTATATTGATCATTGTTGTTGTTGCAGCTGTTGCTTTTGTTCTTCGCCATGCCAATGTTGTCTTCAAGAGGCTTCATCGCTTATGTCCTATCTGCTTTCTCTTGTGCTGTTCTGTCTGCGCTTTTTATCACCAACCACATCCATGATGATGATAACAAGGCAGTTACTTTGTTAGCCTCTCGTGTGTCTGAAACTCTTAAAGTTTGGCCCGACTTGGAGCCAAGTTGGAGACTTTTGTTGGCAACGGTTATTGGGTTTCTTGGTTCAGCATGTGGAACCGTTGGTGGGGTTGGAGGGGGAGGCATTTTCGTTCCCATGCTCAATCTGATTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCATCAACATCATCGGTTTGGTATAATGTGAGAGTGCCACATCCAACAAAAGAGGTGCCCATATTAGACTATGATCTGGCTCTTCTGTTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAGTTAGAATCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTGGTGTGGGTTGGTTTCCTACTAGTTCAAGTCATCAAGAATGATGTAGAGGCATGCAGTGCATGGTATTGGGTGCTTTTTGGCTTGCAGCTTCCAATTGCACTTTTGGTGTTTGGCTATGAAGCAGTGAAGTTGTACAAGGAGCATAAAAGGAGGATGAACACAGGGAACTCAGAATGCATCTGTGAGGCTTCTATAGAATGGACTGCTATTAACCTTGCATTTTGTGCATTGTGTGGCATTGTAGGGGGAATTGTTGGAGGCCTACTTGGTTCTGGAGGTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGGTTCTGGGGACAGTTCTTTGTAAGAAGATTGATTACATGTCTTGGGAGGGCATCAATCATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGGTAAAGAAAACTAAACCGACCTCATCTATTGATCTATATTAGTTTTCTGCTTAAGTACTAACTATATATTAAT

Coding sequences of Glyma13g21310

Limit To All Plant Sequences

>Glyma13g21310.1   sequence type=CDS   gene model=Glyma13g21310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATGTTGTCTTCAAGAGGCTTCATCGCTTATGTCCTATCTGCTTTCTCTTGTGCTGTTCTGTCTGCGCTTTTTATCACCAACCACATCCATGATGATGATAACAAGGCAGTTACTTTGTTAGCCTCTCGTGTGTCTGAAACTCTTAAAGTTTGGCCCGACTTGGAGCCAAGTTGGAGACTTTTGTTGGCAACGGTTATTGGGTTTCTTGGTTCAGCATGTGGAACCGTTGGTGGGGTTGGAGGGGGAGGCATTTTCGTTCCCATGCTCAATCTGATTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCATCAACATCATCGGTTTGGTATAATGTGAGAGTGCCACATCCAACAAAAGAGGTGCCCATATTAGACTATGATCTGGCTCTTCTGTTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAGTTAGAATCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTGGTGTGGGTTGGTTTCCTACTAGTTCAAGTCATCAAGAATGATGTAGAGGCATGCAGTGCATGGTATTGGGTGCTTTTTGGCTTGCAGCTTCCAATTGCACTTTTGGTGTTTGGCTATGAAGCAGTGAAGTTGTACAAGGAGCATAAAAGGAGGATGAACACAGGGAACTCAGAATGCATCTGTGAGGCTTCTATAGAATGGACTGCTATTAACCTTGCATTTTGTGCATTGTGTGGCATTGTAGGGGGAATTGTTGGAGGCCTACTTGGTTCTGGAGGTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGGTTCTGGGGACAGTTCTTTGTAAGAAGATTGATTACATGTCTTGGGAGGGCATCAATCATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGGTGTCGTTGGCATTGAGAACAGCATTCAAATGATAAACAACCATGAGTTCATGGGATTCTTAGGCTTCTGTTCCAGTCAGTGA

>Glyma13g21310.2   sequence type=CDS   gene model=Glyma13g21310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAATGTTGTCTTCAAGAGGCTTCATCGCTTATGTCCTATCTGCTTTCTCTTGTGCTGTTCTGTCTGCGCTTTTTATCACCAACCACATCCATGATGATGATAACAAGGCAGTTACTTTGTTAGCCTCTCGTGTGTCTGAAACTCTTAAAGTTTGGCCCGACTTGGAGCCAAGTTGGAGACTTTTGTTGGCAACGGTTATTGGGTTTCTTGGTTCAGCATGTGGAACCGTTGGTGGGGTTGGAGGGGGAGGCATTTTCGTTCCCATGCTCAATCTGATTCTTGGCTTTGATACTAAGTCTGCTGCTGCTCTTTCTAAATGTATGATAATGGGGGCATCAACATCATCGGTTTGGTATAATGTGAGAGTGCCACATCCAACAAAAGAGGTGCCCATATTAGACTATGATCTGGCTCTTCTGTTTCAGCCTATGCTCATGCTTGGAATCACTGTCGGTGTTGCTCTCAGTGTTGTCTTCCCCTACTGGCTTATCACTGTTCTCATCATCATTCTCTTCATAGGGACTTCTTCAAGGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAGTTAGAATCGACACAAAATATGAACCGTTGATTCCTAAAGAAAAGAAATCAACTATGGAAATTTTATGTCTCAACCTTAGGTGGAAAAGGATTCTGGTACTGATAGTGGTGTGGGTTGGTTTCCTACTAGTTCAAGTCATCAAGAATGATGTAGAGGCATGCAGTGCATGGTATTGGGTGCTTTTTGGCTTGCAGCTTCCAATTGCACTTTTGGTGTTTGGCTATGAAGCAGTGAAGTTGTACAAGGAGCATAAAAGGAGGATGAACACAGGGAACTCAGAATGCATCTGTGAGGCTTCTATAGAATGGACTGCTATTAACCTTGCATTTTGTGCATTGTGTGGCATTGTAGGGGGAATTGTTGGAGGCCTACTTGGTTCTGGAGGTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCAGTGGTTGAATTCTACCTTCTCAAGAGGTTCCCCATTCCTTATGCATTATACCTCACCTCAGTGTCTGTTTTGGCTGGGTTCTGGGGACAGTTCTTTGTAAGAAGATTGATTACATGTCTTGGGAGGGCATCAATCATTGTATTCATCCTCTCAGGTGTCATTTTTGCTAGCGCCCTCACCATGGGTAAAGAAAACTAA

Predicted protein sequences of Glyma13g21310

Limit To All Plant Sequences

>Glyma13g21310.1   sequence type=predicted peptide   gene model=Glyma13g21310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPMLSSRGFIAYVLSAFSCAVLSALFITNHIHDDDNKAVTLLASRVSETLKVWPDLEPSWRLLLATVIGFLGSACGTVGGVGGGGIFVPMLNLILGFDTKSAAALSKCMIMGASTSSVWYNVRVPHPTKEVPILDYDLALLFQPMLMLGITVGVALSVVFPYWLITVLIIILFIGTSSRSFFKGIEMWREETIFKREKTMQRATLVDSQGEDKTVRIDTKYEPLIPKEKKSTMEILCLNLRWKRILVLIVVWVGFLLVQVIKNDVEACSAWYWVLFGLQLPIALLVFGYEAVKLYKEHKRRMNTGNSECICEASIEWTAINLAFCALCGIVGGIVGGLLGSGGGFVLGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLTSVSVLAGFWGQFFVRRLITCLGRASIIVFILSGVIFASALTMGVVGIENSIQMINNHEFMGFLGFCSSQ*

>Glyma13g21310.2   sequence type=predicted peptide   gene model=Glyma13g21310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPMLSSRGFIAYVLSAFSCAVLSALFITNHIHDDDNKAVTLLASRVSETLKVWPDLEPSWRLLLATVIGFLGSACGTVGGVGGGGIFVPMLNLILGFDTKSAAALSKCMIMGASTSSVWYNVRVPHPTKEVPILDYDLALLFQPMLMLGITVGVALSVVFPYWLITVLIIILFIGTSSRSFFKGIEMWREETIFKREKTMQRATLVDSQGEDKTVRIDTKYEPLIPKEKKSTMEILCLNLRWKRILVLIVVWVGFLLVQVIKNDVEACSAWYWVLFGLQLPIALLVFGYEAVKLYKEHKRRMNTGNSECICEASIEWTAINLAFCALCGIVGGIVGGLLGSGGGFVLGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLTSVSVLAGFWGQFFVRRLITCLGRASIIVFILSGVIFASALTMGKEN*

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