Glyma13g21291 - SoyBase

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Report for Sequence Feature Glyma13g21291

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24765311
stop:	24767750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21291

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36640	AT	Annotation by Michelle Graham. TAIR10: embryonic cell protein 63 \| chr2:15357019-15358552 REVERSE LENGTH=448	SoyBase	E_val: 1.00E-81	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
KOG4744	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR23241	Panther	LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED	JGI		ISS
PTHR23241:SF11	Panther	LATE EMBRYOGENESIS ABUNDANT (LEA)	JGI		ISS
PF02987	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_Q39871	UniRef	Annotation by Michelle Graham. Best UniRef hit: Late embryongenesis abundant protein n=2 Tax=Glycine max RepID=Q39871_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39871	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryongenesis abundant protein n=2 Tax=Glycine max RepID=Q39871_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21291

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21291 not represented in the dataset	Glyma13g21291 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21291

Paralog	Evidence	Comments
Glyma10g07410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21291 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g149000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21291

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21291

Limit To All Plant Sequences

>Glyma13g21291.1   sequence type=CDS   gene model=Glyma13g21291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCAAGAAACAAGAGGAGCGAGCTGAGGCAGCTGCGAAAGTTGCTGCCAAAGAACTCGAACAAGTCAACAGAGAAAGAAGAGACCGTGATTTCGGTGTTGTTGCTGAACAACAACAACAACATCATCAGGAAGATCAACAAAAACGTGGTGTAATCGGGTCCATGTTTAAGGCGGTGCAAGACACCTACGAGAACGCCAAGGAAGCTGTCGTTGGCAAGAAAGAAGCTACTAATAACGCGTACAGTAATACAGAGGTTATTCACGATGTTAACATTCAGCCCGATGACGTGTCGGCAACGGGGGAAGTAAGGGACATATCAGCCACAAAGACTCATGATATCTACGATTCTGCCACGGACAACAACAACAACAAAACCGGTTCCAAGGTCGGAGAGTACGCAGATTACGCTTCTCAGAAGGCCAAGGAAACAAAAGATGCAACGATGGAAAAAGCTGGAGAGTACACAGATTATGCTTCGCAGAAAGCGAAGGAAGCGAAGAAGACGACCATGGAGAAGGGTGGAGAATACAAGGATTACTCTGCGGAGAAAGCTAAGGAGAGAAAAGATGCTACTGTGAATAAGATGGGAGAGTATAAGGACTATGCTGCGGAGAAAGCCAAAGAGGGGAAAGATGCTACTGTGAATAAAATGGGAGAGTATAAGGACTATGCTGCGGAGAAAACGAAAGAGGGGAAAGATGCCACTGTGAATAAGATGGGAGAGTATAAGGATTACACTGCGGAGAAGGCGAAAGAGGGGAAAGATACGACGTTGGGGAAGCTTGGGGAGCTGAAGGACACGGCTTCGGATGCGGCGAAGAGGGCCGTGGGTTACTTGAGCGGCAAGAAAGAGGAAACTAAAGAGATGGCTTCGGAGACCGCCGAGGCGACGGCGAATAAGGCAGGGGAGATGAAGGAGGCAACAAAGAAAAAGACGGCGGAGACCGCGGAGGCGGCGAAGAATAAGGCGGGGGAGATCAAGGACAGAGCCGCGGAGACGGCGGAGGCCGCGAAAAACAAGACCGCGGAGACCGCGGAAGTGACGAAGAATAAGGCTTTGGAGATGAAGGATGCAGCGAAGGACAGGACCGCTGAGACAACGGATGCGGCGAAGCAGAAAACTGCACAGGCAAAGGAGAACACCAAGGAAAATGTGAGTGGTGCAGGTGAAACTGCAAGGAGGAAAATGGAAGAGCCAAAGCTTCAAGGTAAAGAAGGGTATGGGGGCCGTGGAGACAAGGTGGTGGTGAAAGTGGAAGAGAGTCGACCAGGGGCAATTGCGGAAACGCTGAAAGCCGCCGACCAGATTGCGGGACAGACCTTCAACGATGTAGGACGCTTCGATGAAGAGGGTGTCGTCAATGTGGAGCGCCGCAAGAAATAA

Predicted protein sequences of Glyma13g21291

Limit To All Plant Sequences

>Glyma13g21291.1   sequence type=predicted peptide   gene model=Glyma13g21291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKKQEERAEAAAKVAAKELEQVNRERRDRDFGVVAEQQQQHHQEDQQKRGVIGSMFKAVQDTYENAKEAVVGKKEATNNAYSNTEVIHDVNIQPDDVSATGEVRDISATKTHDIYDSATDNNNNKTGSKVGEYADYASQKAKETKDATMEKAGEYTDYASQKAKEAKKTTMEKGGEYKDYSAEKAKERKDATVNKMGEYKDYAAEKAKEGKDATVNKMGEYKDYAAEKTKEGKDATVNKMGEYKDYTAEKAKEGKDTTLGKLGELKDTASDAAKRAVGYLSGKKEETKEMASETAEATANKAGEMKEATKKKTAETAEAAKNKAGEIKDRAAETAEAAKNKTAETAEVTKNKALEMKDAAKDRTAETTDAAKQKTAQAKENTKENVSGAGETARRKMEEPKLQGKEGYGGRGDKVVVKVEESRPGAIAETLKAADQIAGQTFNDVGRFDEEGVVNVERRKK*

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