SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03910 | AT | Annotation by Michelle Graham. TAIR10: EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-100 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2370 | KOG | Cactin | JGI | ISS | |
| PTHR21737 | Panther | POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3 | JGI | ISS | |
| PTHR21737:SF4 | Panther | CACTIN-RELATED | JGI | ISS | |
| PF09732 | PFAM | Cactus-binding C-terminus of cactin protein | JGI | ISS | |
| PF10312 | PFAM | Conserved mid region of cactin | JGI | ISS | |
| UniRef100_G7IA50 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cactin (ISS) n=1 Tax=Medicago truncatula RepID=G7IA50_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CEF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CEF2 related cluster n=1 Tax=unknown RepID=UPI000233CEF2 | SoyBase | E_val: 0 | ISS |
|
Glyma13g21200 not represented in the dataset |
Glyma13g21200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g148300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21200.2 sequence type=CDS gene model=Glyma13g21200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTGTTTCCAATCACCGGACGTTGATTGGCACCGTCGTCTTCATTTCGCAGCCATCTTCTGCGCCACAGGTAGCAAGAGTAGGAAAGAGAGAAGGCGAAGAAGATCCGGTGATTCTTCACGGTCCGATGATGATGCGGAAAGCCGTGATTTGTCCTCTCAGGAGAGACGCCGGAGAGACGGTCACCTCGGCCACCGTCGATTGTGGCGGGGACGGAGCAGGCAGGACTCAGATAGTTCCTCTGATGAGAGTAGTGATAGGGGTGGCAAGAGGAAGAGGTCCTCCAGGCACGTCACTGAAGAGGAAATAGCACAGTACTTGGCCAAAAAGGCTCAGAGGAAGGCATTGAAAGATGCTAAGAAACTGAAGACTCGTACCGTGTCAGGGTATTCGAATGACTCAAATCCATTTGGTGACTCCAATCTTAACGAGAAGTTTGTTTGGCGGAAGAAGATTGAGCTTGATGTCGTTCAAGGTGTGCCTATTGATGCATTTTCAGTTAAAGCTGAAAAAAAGAGACAGAAAGAAAGGATGGCAGAAATTGAAAAAGTGAAAAAAAGAAGAGAAGAAAGGGCACTTGAGAAAGCACGACATGAAGAAGAAATGGCACTGTTAGCTAGAGAACGTGCACGAGCTGAGTTCCACGACTGGCAAAAAAGAGAAGAGGAGTTTCATTTTGATCAAAGCAAGGTTAGATCTGAGATTAGATTGCGTGAAGGGCGTGCTAGGCCGATTGATATCCTAACCAAGCACCTCAATGGATCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTGTTCAAGGGCTTGACAGTAAAGGAAATGGAAGAACTTCATGATGACATCAAAATGCATCTGGACCTTGACAGGGACACACCCACCCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAGGATGCAATTGATCGAGCTAGGGTGCGTGGTGAAGAACCTCCCGCAGATCTGCTTGCAGAAGAAAGGGGTCTGCATTACAGTGTTGAGCCAGATGTGAAGAATCTTTTGCAGGGGAAAACACATGCAGAATTGGAAGCTTATCAGGTGCATACAGAGTCAGAGATGCGTACTGGTACAGCAAAAGTGGTTGAGTACTGGGAGGCAGTTTTAAAACACCTCCACATATATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCCAAGATGTTATGCAAGCACTTGCAACGCCCTGAACAACCATTGGAGGATGAAGATGAATTGGAAGATGCTCAAGTTAGAAACTCTGAGGACGATACTGAGCACTATGCTAAAGTCCAATATGCAGATGAATCATTTTCACCAGAACCCATTAAAGGAGAAGTTCAAGAAGCCAAAGATCAGGCTGGCTCATTTTCACCGGAACTGTTTCATGGTGATGAAAATGAGGAAGCTATTGACCCTGAAGAGGATCGAGCTCTACTGGAGCAGAAACGCATGGCTGTAAAGGAAGAGCAGCAAAGACAAATTCAGGAAGCAATGGCATCAAAGCCTGCTCCATCTGAAGATAATTTTGAGATGAAGGCCATGAAAGCTATGGGAGCTATGGAAGATGGGGACGCAGTGTTTGGCTCTGGTGCTGAAGTGAATCTAGATTCAGAGGTTTATTGGTGGCATGACAAATACAGAGCCAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAATGGAATAAATACAATCAGACTCACTACGATCATGACAATCCACCTCCAAAGGTTGTACAAGGGTATAAATTTAACATCTTCTACCCAGATCTTGTAGACAAGACAAAAGCTCCAACTTACACTATTGAGAAGGATGGCAGCAATGGTGAGACTTGCATCATAAGATTTCATGCAGGGCCACCATACGAAGACATTACACTGGCTTACATTCTGGTTTTCTCTCCTACCGGTTGGCTTCCATTTTGA
>Glyma13g21200.2 sequence type=predicted peptide gene model=Glyma13g21200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCFQSPDVDWHRRLHFAAIFCATGSKSRKERRRRRSGDSSRSDDDAESRDLSSQERRRRDGHLGHRRLWRGRSRQDSDSSSDESSDRGGKRKRSSRHVTEEEIAQYLAKKAQRKALKDAKKLKTRTVSGYSNDSNPFGDSNLNEKFVWRKKIELDVVQGVPIDAFSVKAEKKRQKERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFHDWQKREEEFHFDQSKVRSEIRLREGRARPIDILTKHLNGSDDLDIEINEPYMVFKGLTVKEMEELHDDIKMHLDLDRDTPTHVEYWEALLLVCDWELAEARKKDAIDRARVRGEEPPADLLAEERGLHYSVEPDVKNLLQGKTHAELEAYQVHTESEMRTGTAKVVEYWEAVLKHLHIYKAKACLKEIHAKMLCKHLQRPEQPLEDEDELEDAQVRNSEDDTEHYAKVQYADESFSPEPIKGEVQEAKDQAGSFSPELFHGDENEEAIDPEEDRALLEQKRMAVKEEQQRQIQEAMASKPAPSEDNFEMKAMKAMGAMEDGDAVFGSGAEVNLDSEVYWWHDKYRARKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDITLAYILVFSPTGWLPF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
