Report for Sequence Feature Glyma13g21200
Feature Type: gene_model
Chromosome: Gm13
Start: 24703706
stop: 24710012
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g21200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03910 AT
Annotation by Michelle Graham. TAIR10: EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-100
SoyBase E_val: 0 ISS
GO:0000956 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0051604 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein maturation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2370
KOG
Cactin
JGI ISS
PTHR21737 Panther
POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3
JGI ISS
PTHR21737:SF4 Panther
CACTIN-RELATED
JGI ISS
PF09732 PFAM
Cactus-binding C-terminus of cactin protein
JGI ISS
PF10312 PFAM
Conserved mid region of cactin
JGI ISS
UniRef100_G7IA50 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cactin (ISS) n=1 Tax=Medicago truncatula RepID=G7IA50_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233CEF2 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CEF2 related cluster n=1 Tax=unknown RepID=UPI000233CEF2
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g21200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma13g21200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g148300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g21200
Coding sequences of Glyma13g21200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g21200.2 sequence type=CDS gene model=Glyma13g21200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCTGTTTCCAATCACCGGACGTTGATTGGCACCGTCGTCTTCATTTCGCAGCCATCTTCTGCGCCACAGGTAGCAAGAGTAGGAAAGAGAGAAGGCGAAGAAGATCCGGTGATTCTTCACGGTCCGATGATGATGCGGAAAGCCGTGATTTGTCCTCTCAGGAGAGACGCCGGAGAGACGGTCACCTCGGCCACCGTCGATTGTGGCGGGGACGGAGCAGGCAGGACTCAGATAGTTCCTCTGATGAGAGTAGTGATAGGGGTGGCAAGAGGAAGAGGTCCTCCAGGCACGTCACTGAAGAGGAAATAGCACAGTACTTGGCCAAAAAGGCTCAGAGGAAGGCATTGAAAGATGCTAAGAAACTGAAGACTCGTACCGTGTCAGGGTATTCGAATGACTCAAATCCATTTGGTGACTCCAATCTTAACGAGAAGTTTGTTTGGCGGAAGAAGATTGAGCTTGATGTCGTTCAAGGTGTGCCTATTGATGCATTTTCAGTTAAAGCTGAAAAAAAGAGACAGAAAGAAAGGATGGCAGAAATTGAAAAAGTGAAAAAAAGAAGAGAAGAAAGGGCACTTGAGAAAGCACGACATGAAGAAGAAATGGCACTGTTAGCTAGAGAACGTGCACGAGCTGAGTTCCACGACTGGCAAAAAAGAGAAGAGGAGTTTCATTTTGATCAAAGCAAGGTTAGATCTGAGATTAGATTGCGTGAAGGGCGTGCTAGGCCGATTGATATCCTAACCAAGCACCTCAATGGATCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTGTTCAAGGGCTTGACAGTAAAGGAAATGGAAGAACTTCATGATGACATCAAAATGCATCTGGACCTTGACAGGGACACACCCACCCATGTAGAATATTGGGAGGCACTCCTTCTGGTTTGTGATTGGGAGCTAGCTGAAGCTCGAAAAAAGGATGCAATTGATCGAGCTAGGGTGCGTGGTGAAGAACCTCCCGCAGATCTGCTTGCAGAAGAAAGGGGTCTGCATTACAGTGTTGAGCCAGATGTGAAGAATCTTTTGCAGGGGAAAACACATGCAGAATTGGAAGCTTATCAGGTGCATACAGAGTCAGAGATGCGTACTGGTACAGCAAAAGTGGTTGAGTACTGGGAGGCAGTTTTAAAACACCTCCACATATATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCCAAGATGTTATGCAAGCACTTGCAACGCCCTGAACAACCATTGGAGGATGAAGATGAATTGGAAGATGCTCAAGTTAGAAACTCTGAGGACGATACTGAGCACTATGCTAAAGTCCAATATGCAGATGAATCATTTTCACCAGAACCCATTAAAGGAGAAGTTCAAGAAGCCAAAGATCAGGCTGGCTCATTTTCACCGGAACTGTTTCATGGTGATGAAAATGAGGAAGCTATTGACCCTGAAGAGGATCGAGCTCTACTGGAGCAGAAACGCATGGCTGTAAAGGAAGAGCAGCAAAGACAAATTCAGGAAGCAATGGCATCAAAGCCTGCTCCATCTGAAGATAATTTTGAGATGAAGGCCATGAAAGCTATGGGAGCTATGGAAGATGGGGACGCAGTGTTTGGCTCTGGTGCTGAAGTGAATCTAGATTCAGAGGTTTATTGGTGGCATGACAAATACAGAGCCAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAATGGAATAAATACAATCAGACTCACTACGATCATGACAATCCACCTCCAAAGGTTGTACAAGGGTATAAATTTAACATCTTCTACCCAGATCTTGTAGACAAGACAAAAGCTCCAACTTACACTATTGAGAAGGATGGCAGCAATGGTGAGACTTGCATCATAAGATTTCATGCAGGGCCACCATACGAAGACATTACACTGGCTTACATTCTGGTTTTCTCTCCTACCGGTTGGCTTCCATTTTGA
Predicted protein sequences of Glyma13g21200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g21200.2 sequence type=predicted peptide gene model=Glyma13g21200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSCFQSPDVDWHRRLHFAAIFCATGSKSRKERRRRRSGDSSRSDDDAESRDLSSQERRRRDGHLGHRRLWRGRSRQDSDSSSDESSDRGGKRKRSSRHVTEEEIAQYLAKKAQRKALKDAKKLKTRTVSGYSNDSNPFGDSNLNEKFVWRKKIELDVVQGVPIDAFSVKAEKKRQKERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFHDWQKREEEFHFDQSKVRSEIRLREGRARPIDILTKHLNGSDDLDIEINEPYMVFKGLTVKEMEELHDDIKMHLDLDRDTPTHVEYWEALLLVCDWELAEARKKDAIDRARVRGEEPPADLLAEERGLHYSVEPDVKNLLQGKTHAELEAYQVHTESEMRTGTAKVVEYWEAVLKHLHIYKAKACLKEIHAKMLCKHLQRPEQPLEDEDELEDAQVRNSEDDTEHYAKVQYADESFSPEPIKGEVQEAKDQAGSFSPELFHGDENEEAIDPEEDRALLEQKRMAVKEEQQRQIQEAMASKPAPSEDNFEMKAMKAMGAMEDGDAVFGSGAEVNLDSEVYWWHDKYRARKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKVVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDITLAYILVFSPTGWLPF*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
