Glyma13g21190 - SoyBase

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Report for Sequence Feature Glyma13g21190

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24692671
stop:	24701540
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36660	AT	Annotation by Michelle Graham. TAIR10: poly(A) binding protein 7 \| chr2:15361476-15364398 REVERSE LENGTH=609	SoyBase	E_val: 2.00E-172	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG0123	KOG	Polyadenylate-binding protein (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF159	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7L4Y5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate binding protein n=1 Tax=Medicago truncatula RepID=G7L4Y5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LZC6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZC6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21190

Paralog	Evidence	Comments
Glyma10g07280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g148200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21190

Limit To All Plant Sequences

>Glyma13g21190.1   sequence type=CDS   gene model=Glyma13g21190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTCCCGCGACGGTCGCCGCCGTTCCGGCATCGATTTACGTCGGAGACCTCCACCCAGACGTCCAGGAACACCACCTCTTCGCGGCTTTCGTGGAGTTCGGGAGCATCGCTTCCGTTCGCGTCTGCAGAGACCGCGTGACGATGAACTCGCTCTGTTACGGTTACGTCAACTTCAGGTCTCAGCAAGATGCAATTCGTGCAATCAAGTTGAGAAACAATTCTTATCTAAATGGAAAAGTGATAAGGGTCATGTGGTTACATCGTGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGCTACATGATTTATTTAAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTAATGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTGGGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTACAGTGGGAAACAAGCAGATTTATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCTATGATGCTAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCCTCTTTTGGAAAAATTATTAGCTTGGCTATATCGAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATTACAATTTGGTTCAAAGTATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCGCCAATTTGAGGAGAAACGTAAGGAACAAATATTGAAATATCAGGCATCTAACTTGTATGTGAAGAACATTGATGATGATGTTACCGATAAAGAACTGCGAGATCTGTTTAGCTCATGTGGCACTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCAGAGGAGGCTAATAAAGCTGTGATGTCTTTTAATGGATGCACGTTCCACCGTAAACCACTGTATATTGCTATTGCTCAGAGGAAAAAGGAAAGGAAAACACAGTTGAATCTCCACTATGCACCGCAACAAGCAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGAGTTCCACCTTACTTCTATCATAGTGTTGCTTCACTAATGTTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGTGCCTCCCGCTAGATCATTTCAACATTCACAGGTTCCCATTGTTCCTAACTTTACTAGGCATCAAAGGCAGAACAGGGGCAGCAGGATGAATGGGAATTTGAATTCACTGGGAAAAGCTTACTCTAGTGTATATATCCCGCAACTGCAATACTATCAGGCAGTTGAGTACTCGGCAGCCTAG

Predicted protein sequences of Glyma13g21190

Limit To All Plant Sequences

>Glyma13g21190.1   sequence type=predicted peptide   gene model=Glyma13g21190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVPATVAAVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLMFQSGLLYQPLGLRSGWRANDFVPPARSFQHSQVPIVPNFTRHQRQNRGSRMNGNLNSLGKAYSSVYIPQLQYYQAVEYSAA*

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