Report for Sequence Feature Glyma13g21170
Feature Type: gene_model
Chromosome: Gm13
Start: 24660626
stop: 24663262
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g21170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03560 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:900673-902719 REVERSE LENGTH=241
SoyBase E_val: 6.00E-91 ISS
GO:0015931 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0015391 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleobase:cation symporter activity
SoyBase N/A ISS
PF09350 PFAM
Domain of unknown function (DUF1992)
JGI ISS
UniRef100_G7IA78 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily C member n=1 Tax=Medicago truncatula RepID=G7IA78_MEDTR
SoyBase E_val: 2.00E-106 ISS
UniRef100_I1LZC4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZC4_SOYBN
SoyBase E_val: 5.00E-154 ISS
Expression Patterns of Glyma13g21170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma13g21170
Paralog Evidence Comments
Glyma10g07260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g21170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g148000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g21170
Coding sequences of Glyma13g21170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g21170.1 sequence type=CDS gene model=Glyma13g21170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACGTGTCTTCTTCGCGTTGGGAGATTTACGAGTATCGATTCGCGCTCTCTCTTCGTTTCCACTGCTAGTTTCTCCTCTTCTTTCTCTTCGCCGTCATCTTCCGGTAAGTCTAAGACGGGGAAGAAGCTCACGGATCGTCTTTCCTCCGTCATCGACGCCGTCAACGATCGCAAACTACCTCCCGAGCTACGCGGCCAGCACAACAACGTCAGGTCAGAAACTGACATGATCAATGTTGTTGAGCAAAGAATATGGCATTCCATGGAAGAGGGCCAGTTTGAGAACTTGCCAGGCAAAGGCAAGCCGCTTAAGCTTGACACAAATCCTCATGCGGATCCAGCTGAAGACACCCTGTACCGCATCCTGTCGAAAAATGGATGTGCGCCAGAGTGGGTTGAGCTTAACAAAGAGATTAGATCTAAAATATCTGAATGGAGGAAGTCCTTGAAGAAAGCTTGGGCTACTAAGTGCAGTGGTGATCACTCTGAGTGGGTTGAAAGTACAGAGGCTTTAAAATCACAGTTACGAGAAATCAACGATAAGGTTTTCCGGTATAACCTTATTGTGCCTTTTGGTCGGCAAATGTTTGGCCTTAAGTGGGAGAAAGAGCTAGGTTACTTAGAAGAAAAGTGA
Predicted protein sequences of Glyma13g21170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g21170.1 sequence type=predicted peptide gene model=Glyma13g21170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATCLLRVGRFTSIDSRSLFVSTASFSSSFSSPSSSGKSKTGKKLTDRLSSVIDAVNDRKLPPELRGQHNNVRSETDMINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSKISEWRKSLKKAWATKCSGDHSEWVESTEALKSQLREINDKVFRYNLIVPFGRQMFGLKWEKELGYLEEK*