Glyma13g21140 - SoyBase

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Report for Sequence Feature Glyma13g21140

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24640486
stop:	24642893
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76590	AT	Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein \| chr1:28740875-28741894 FORWARD LENGTH=245	SoyBase	E_val: 1.00E-69	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PF04640	PFAM	PLATZ transcription factor	JGI		ISS
UniRef100_I1LZC1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZC1_SOYBN	SoyBase	E_val: 2.00E-154	ISS
UniRef100_Q01HI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0142I02-OSIGBa0101B20.4 protein n=2 Tax=Oryza sativa RepID=Q01HI5_ORYSA	SoyBase	E_val: 2.00E-70	ISS

Expression Patterns of Glyma13g21140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21140

Paralog	Evidence	Comments
Glyma10g07240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g147800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g21140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g21140

Limit To All Plant Sequences

>Glyma13g21140.2   sequence type=transcript   gene model=Glyma13g21140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGATTAATTGCCCATTTTTGTTTCTTTTTGTTTTTTATCAAAAAAATTTGTTTGAGCTGCAGGGCACAATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCGATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTTATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGACAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGGGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTGCTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGCATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGATATGTACCCGGCCACGCCTTCTCCACCTGCTTCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAATCATTTATTTTTCTTTTTACCCTAAAAAATTAGTGGTACATAGACTCAATATTCAACCCCGTTTACCATTTTTTTTTTCTTTCTTTCTTCCTTTGAAACAAATTAACCCCTCTTTGAGGGGCGAATCTGGTCAGTAGTATAATTAATTTTTTCAGTAAAGAGAAAAAGAAAATGGTAGGCTTTGGTGGAGGATGTCATTTGTCCAATGTCCATGAAGTGGGAAAAGCAAAAGAAAGGAAAGGGGTATATAGGAAAGTTCCTTCTTTTTGGGGTTTGGGTCCCAAAACAACAAATTATCACTTGTGAAGAACCAATAATGCATATTTGTTTAATATTTAAATGCTTGCGAGTGTACATGTCATTAAGAAATTAAAAAGCAAGACTTTGTGGAGTCCGTTTCAATGTTTCATAGTTTTCTATGCCCCACCATCCACATGGGCCGTTTACATGAAGTTAATCACACCACTTATACCTTATATCATATAGCAGTACTATTTAAT

Coding sequences of Glyma13g21140

Limit To All Plant Sequences

>Glyma13g21140.1   sequence type=CDS   gene model=Glyma13g21140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCACAATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCGATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTTATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGACAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGGGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTGCTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGCATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGATATGTACCCGGCCACGCCTTCTCCACCTGCTTCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA

>Glyma13g21140.2   sequence type=CDS   gene model=Glyma13g21140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAAACACATCCTTCTTCGATGTGTGTCGGATTCACGGAGATGCCGCGAGGAGCGAATGTAACATGTTTTGTCTCGACTGCAATGAGAATGCGTTTTGCTTCTATTGCCGTTCCTCAAAACACAAGGATCACCAAGTTATTCAGATACGGAGATCTTCGTATCACGATGTAGTGAGGGTGGCGGAAATTCAGACAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACAGTGCCAGGGTTTTGTTTCTGAATGAGAGGCCTCAACCAAAGTCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCATTTCGCTTCTGTTCTTTGGGGTGTAAGCTTGTAGGAATAAAGAGAAATGGGGATGCAAGTTTTGCTTTGGATGCTAAAAATGAGGCATCAACAATGGAGGGCATGTCAAGGAGATCGGTTTCTTCAAGACATCATCAAGAAGAAGAATTGCGTGAAGGCTCACAACAAGATATGTACCCGGCCACGCCTTCTCCACCTGCTTCTTCAAACGCAAGGAGAAGAAAAGGGATTCCTCATAGGGCACCTTTTGGCTCCTAA

Predicted protein sequences of Glyma13g21140

Limit To All Plant Sequences

>Glyma13g21140.1   sequence type=predicted peptide   gene model=Glyma13g21140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTMLVPPWLEPLLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQTVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFALDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASSNARRRKGIPHRAPFGS*

>Glyma13g21140.2   sequence type=predicted peptide   gene model=Glyma13g21140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVPPWLEPLLNTSFFDVCRIHGDAARSECNMFCLDCNENAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVAEIQTVLDISGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLVGIKRNGDASFALDAKNEASTMEGMSRRSVSSRHHQEEELREGSQQDMYPATPSPPASSNARRRKGIPHRAPFGS*

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