Glyma13g21056 - SoyBase

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Report for Sequence Feature Glyma13g21056

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24545010
stop:	24549947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g21056

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36720	AT	Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain \| chr2:15393447-15399189 FORWARD LENGTH=1007	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7L4X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromodomain-helicase-DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7L4X9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CEEB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CEEB related cluster n=1 Tax=unknown RepID=UPI000233CEEB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g21056

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g21056 not represented in the dataset	Glyma13g21056 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g21056

Paralog	Evidence	Comments
Glyma10g07170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g21056 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma13g21056

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g21056

Limit To All Plant Sequences

>Glyma13g21056.1   sequence type=CDS   gene model=Glyma13g21056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCATCCAAACTGTCGGTAAAATTGAAGACTGTACCAATTACTTCAAAGTGTTTATCTCCACAAAACAAAAGTCAGTGGAGGATCTCTAAAAGGTATCAACGATTACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACACGCTGTGGAATTGTCTGTCGATGCTGCAACACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCAATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGACTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACATTCCTCAGAGAAAGGCCTGTGTTATACAATGCCGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATCGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATGGGTGGATGTGTTTTATGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCTCGTACAATTATAATTTGTGATCAGTGCGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAGAAGGCATATTTGAAGGAGTTGCCGGAAGGGGATTGGTTTTGTTGCAATGATTGCACAATAATACATTCTACTTTGGAGAATCTCTTGATTAGGGTGGCTGAGAGACTCCCTGAAGCTCTTTTGGATGTTATAAAGAAGAAGCAAGTGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTACGATGGAAACTTCTTAATGGAAAAATTGCATCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTTATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGGTTCGAATTTTTGGTAGAGATATTGCTGAACTCCCTTTAGTTGCAACAAGATATAAGAACCGTGGAAAGGGCTACTTCCAAACACTTTTCGCATGCATTGAGAGGCTGCTGGCTTTTTTGAATGTGAAAAATCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCAATATGGACAGAAAAATTCGGGTTTAGCAAGATGAAACTTGACCAGCTCACCAACTATAGAATGAACTGCCATCAAATCATGGCATTCAAAGGGACAAACATGCTTCATAAAACGGTGCCTCGATGTCGGGTCACCAATTCTCAAGCATGA

Predicted protein sequences of Glyma13g21056

Limit To All Plant Sequences

>Glyma13g21056.1   sequence type=predicted peptide   gene model=Glyma13g21056   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSKLSVKLKTVPITSKCLSPQNKSQWRISKRYQRLHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRCGIVCRCCNTEVSPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEMGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKKAYLKELPEGDWFCCNDCTIIHSTLENLLIRVAERLPEALLDVIKKKQVERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMVRIFGRDIAELPLVATRYKNRGKGYFQTLFACIERLLAFLNVKNLVLPAAEEAESIWTEKFGFSKMKLDQLTNYRMNCHQIMAFKGTNMLHKTVPRCRVTNSQA*

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