SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22220 | AT | Annotation by Michelle Graham. TAIR10: SufE/NifU family protein | chr4:11759444-11760881 REVERSE LENGTH=167 | SoyBase | E_val: 1.00E-85 | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005198 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural molecule activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| KOG3361 | KOG | Iron binding protein involved in Fe-S cluster formation | JGI | ISS | |
| PTHR10093 | Panther | NITROGEN FIXATION PROTEIN NIFU | JGI | ISS | |
| PF01592 | PFAM | NifU-like N terminal domain | JGI | ISS | |
| UniRef100_B7FHC6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Iron sulfur cluster assembly protein n=1 Tax=Medicago truncatula RepID=B7FHC6_MEDTR | SoyBase | E_val: 8.00E-97 | ISS |
| UniRef100_I1LZB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZB1_SOYBN | SoyBase | E_val: 3.00E-122 | ISS |
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Glyma13g21010 not represented in the dataset |
Glyma13g21010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g146800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g21010.2 sequence type=transcript gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGATATAGAAGATTCTCCGCTCGCCACGTGTCCATTTAAAACCGCCTTAAAGGGAATCTATTTATTGTCTTCCTCTTCAGAATCCCTAACCAAAACCACTCGTCGACCGCAAAAGAGAAAAAAACAAAAATGCTGAGAATCGCTGCTAGCGCGAAGACAATTGTTCGAACGGGGTCGTTGGAGGCGCCACCATTGGGGATTAGGGTTCTGCCTCGGCTCTACCACGAGAGGGTGGTGGACCACTACGATAACCCCCGCAACGTTGGATCCTTCGACAAGAACGACCCCACCGTCGGAACGGGTCTTGTCGGAGCACCCGCGTGTGGTGACGTCATGAAACTCCAGATTAAGGTTGATGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGGTGTGGATCCGCTATTGCTTCCTCCTCCGTCGCTACTGAATGGGTTAAGGAAAAGCAAATAGAGGAAGTTTTGACCATTAAAAACACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTGCCTCAGCATCTGCTGGTGGACAGACTACAACTGGAGAGAAAGCTGCCACTGCTTGATTACTTCCATTTCTAGAACGATGATGAAAACAACCAATAGTATGGTTTTCTGACAGGACTCAATGAACACTGTATGAACATCTTGAGGGTGGGAGCGTAGACCCTTGATCATATGGATGGTTCTTGGTTGTTTGCAAAGCATCATTGGATGACTTATCAGTATGCTTTTAGCTTAGGTCTTGCAATCTCTTTCTTTTGTATGAAGTCTTTTTTTCTTTGTTTGATACTTATGAAGTCTATTTTATCTTCCATAACTTTTTGTTGCACATGAGATTATGTATTTTCAAAACAGAAAATGATGGGCGATGATCTTTTTTTTTTTGCTGTATTAATTTATCTTTTTGAAAGCAGATATGAAATAAAGATAATATTGTTGCATTAGCAGGAGTTTCCGGACACATGATCCATGCTCTGCCCTTAGTTAAATGATGGATTTCTTTTGTTATGCAGTGTACTTGTACTGTTTCCTATTGTTATACAGTGTGCTGGATACCTTTTTTTTTTTTTGACAGAAGCTTGCAAGTTACAATGCCTTTAATTTATAAAT >Glyma13g21010.3 sequence type=transcript gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGGATATAGAAGATTCTCCGCTCGCCACGTGTCCATTTAAAACCGCCTTAAAGGGAATCTATTTATTGTCTTCCTCTTCAGAATCCCTAACCAAAACCACTCGTCGACCGCAAAAGAGAAAAAAACAAAAATGCTGAGAATCGCTGCTAGCGCGAAGACAATTGTTCGAACGGGGTCGTTGGAGGCGCCACCATTGGGGATTAGGGTTCTGCCTCGGCTCTACCACGAGAGGGTGGTGGACCACTACGATAACCCCCGCAACGTTGGATCCTTCGACAAGAACGACCCCACCGTCGGAACGGGTCTTGTCGGAGCACCCGCGTGTGGTGACGTCATGAAACTCCAGATTAAGGTTGATGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGGTGTGGATCCGCTATTGCTTCCTCCTCCGTCGCTACTGAATGGGTTAAGGAAAAGCAAATAGAGGAAGTTTTGACCATTAAAAACACGGTGGGAGCGTAGACCCTTGATCATATGGATGGTTCTTGGTTGTTTGCAAAGCATCATTGGATGACTTATCAGTATGCTTTTAGCTTAGGTCTTGCAATCTCTTTCTTTTGTATGAAGTCTTTTTTTCTTTGTTTGATACTTATGAAGTCTATTTTATCTTCCATAACTTTTTGTTGCACATGAGATTATGTATTTTCAAAACAGAAAATGATGGGCGATGATCTTTTTTTTTTTGCTGTATTAATTTATCTTTTTGAAAGCAGATATGAAATAAAGATAATATTGTTGCATTAGCAGGAGTTTCCGGACACATGATCCATGCTCTGCCCTTAGTTAAATGATGGATTTCTTTTGTTATGCAGTGTACTTGTACTGTTTCCTATTGTTATACAGTGTGCTGGATACCTTTTTTTTTTTTTGACAGAAGCTTGCAAGTTACAATGCCTTTAATTTATAAAT
>Glyma13g21010.1 sequence type=CDS gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAGAATCGCTGCTAGCGCGAAGACAATTGTTCGAACGGGGTCGTTGGAGGCGCCACCATTGGGGATTAGGGTTCTGCCTCGGCTCTACCACGAGAGGGTGGTGGACCACTACGATAACCCCCGCAACGTTGGATCCTTCGACAAGAACGACCCCACCGTCGGAACGGGTCTTGTCGGAGCACCCGCGTGTGGTGACGTCATGAAACTCCAGATTAAGGTTGATGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGGTGTGGATCCGCTATTGCTTCCTCCTCCGTCGCTACTGAATGGGTTAAGGAAAAGCAAATAGAGGAAGTTTTGACCATTAAAAACACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTGCCTCAGCATCTGCTGGTGGACAGACTACAACTGGAGAGAAAGCTGCCACTGCTTGA >Glyma13g21010.2 sequence type=CDS gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAGAATCGCTGCTAGCGCGAAGACAATTGTTCGAACGGGGTCGTTGGAGGCGCCACCATTGGGGATTAGGGTTCTGCCTCGGCTCTACCACGAGAGGGTGGTGGACCACTACGATAACCCCCGCAACGTTGGATCCTTCGACAAGAACGACCCCACCGTCGGAACGGGTCTTGTCGGAGCACCCGCGTGTGGTGACGTCATGAAACTCCAGATTAAGGTTGATGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGGTGTGGATCCGCTATTGCTTCCTCCTCCGTCGCTACTGAATGGGTTAAGGAAAAGCAAATAGAGGAAGTTTTGACCATTAAAAACACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTGCCTCAGCATCTGCTGGTGGACAGACTACAACTGGAGAGAAAGCTGCCACTGCTTGA >Glyma13g21010.3 sequence type=CDS gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGAGAATCGCTGCTAGCGCGAAGACAATTGTTCGAACGGGGTCGTTGGAGGCGCCACCATTGGGGATTAGGGTTCTGCCTCGGCTCTACCACGAGAGGGTGGTGGACCACTACGATAACCCCCGCAACGTTGGATCCTTCGACAAGAACGACCCCACCGTCGGAACGGGTCTTGTCGGAGCACCCGCGTGTGGTGACGTCATGAAACTCCAGATTAAGGTTGATGACAAAACGGGGAAGATCGTCGATGCTCGCTTCAAAACCTTCGGGTGTGGATCCGCTATTGCTTCCTCCTCCGTCGCTACTGAATGGGTTAAGGAAAAGCAAATAGAGGAAGTTTTGACCATTAAAAACACGGTGGGAGCGTAG
>Glyma13g21010.1 sequence type=predicted peptide gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIAASAKTIVRTGSLEAPPLGIRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKEKQIEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASASAGGQTTTGEKAATA* >Glyma13g21010.2 sequence type=predicted peptide gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIAASAKTIVRTGSLEAPPLGIRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKEKQIEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASASAGGQTTTGEKAATA* >Glyma13g21010.3 sequence type=predicted peptide gene model=Glyma13g21010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRIAASAKTIVRTGSLEAPPLGIRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKEKQIEEVLTIKNTVGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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