SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03300 | AT | Annotation by Michelle Graham. TAIR10: adenosine kinase 2 | chr5:796573-798997 FORWARD LENGTH=345 | SoyBase | E_val: 0 | ISS |
| GO:0006166 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleoside salvage | SoyBase | N/A | ISS |
| GO:0006169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: adenosine salvage | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004001 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenosine kinase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2854 | KOG | Possible pfkB family carbohydrate kinase | JGI | ISS | |
| PTHR10584 | Panther | SUGAR KINASE RELATED | JGI | ISS | |
| PTHR10584:SF24 | Panther | RIBOKINASE | JGI | ISS | |
| PF00294 | PFAM | pfkB family carbohydrate kinase | JGI | ISS | |
| UniRef100_G7IAA1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine kinase n=2 Tax=Medicago truncatula RepID=G7IAA1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LZ92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ92_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g20780 not represented in the dataset |
Glyma13g20780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g06580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g144800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20780.1 sequence type=CDS gene model=Glyma13g20780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTGGACGGCGTTCTCCTCGGCATGTGCAACCCTCTCCTCGACATCTCTGCCGTCGTCGACGACGCTTTCTTGCAAAAATACGGTATCAAGTTGAACGATGCGATTCTCGCTGAGGATAAGCACAAACCTATGTATGAAGAATTGGCTAACAATCCTAATGTGGAGTACATTGCTGGAGGTGCTACTCAGAATTCAATCAGGGTTGCTCAGTGGATGCTTCAAGCACCAGGTGCCACAAGTTACATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTTGATGGTGTAAAGGTTAACTATTATGAAATCGACAATACACCTACTGGAACTTGTGCTGTTTGTGTGGTTGGCGGTGAAAGGTCCCTTGTTGCCAACTTATCAGCTGCAAATTGCTATAAGTCTGAGCATTTGACGAGACCGGAAAATTGGGCATTAGTTGAAAAGGCCAAGTATTTCTACATTTCTGGCTTTTTCCTCACTGTATCTCCTGATTCCATACAATTAGTTGCTGAACATGCAGCTGCAAATAACAAGTTCTTCATGATGAACCTTTCTGCCCCATTTATCTGTGAGTTCTTCAAGGATGCACTGAATAAAGTTCTGCCATATATGGACTACGTTTTTGGTAATGAGACTGAAGCAAGAACATTTTCTAAAGCTCAAGGCTGGGAGACTGATAATGTTGAGGAAATAGCTTTGAAGATTTCTCAGTTGCCAAAGGCATCGGAAACACATAAAAGGATTACGGTTATCACCCAAGGTGCAGATCCTGTTTGCGTTGCCGAGGATGGAAAAGTGAAAATTTACCCCGTGATACCGTTACCTAAAGAGAAATTAGTTGACACAAATGGAGCAGGAGATGCTTTTGTTGGAGGATTTCTTTCACAATTGGTTAAGCATAAGCCCATTGAAGAATGCATTAGAGCTGGGTGTTATGCAGCCAATGTTATCATCCAAAGGCCTGGCTGCACATACCCACCGACGCCTGATTTTCATTGA
>Glyma13g20780.1 sequence type=predicted peptide gene model=Glyma13g20780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELDGVLLGMCNPLLDISAVVDDAFLQKYGIKLNDAILAEDKHKPMYEELANNPNVEYIAGGATQNSIRVAQWMLQAPGATSYIGCIGKDKFGEEMKKKCTLDGVKVNYYEIDNTPTGTCAVCVVGGERSLVANLSAANCYKSEHLTRPENWALVEKAKYFYISGFFLTVSPDSIQLVAEHAAANNKFFMMNLSAPFICEFFKDALNKVLPYMDYVFGNETEARTFSKAQGWETDNVEEIALKISQLPKASETHKRITVITQGADPVCVAEDGKVKIYPVIPLPKEKLVDTNGAGDAFVGGFLSQLVKHKPIEECIRAGCYAANVIIQRPGCTYPPTPDFH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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