Report for Sequence Feature Glyma13g20730
Feature Type: gene_model
Chromosome: Gm13
Start: 24200245
stop: 24207724
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g20730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G03330 AT
Annotation by Michelle Graham. TAIR10: Cysteine proteinases superfamily protein | chr5:807728-809608 FORWARD LENGTH=356
SoyBase E_val: 6.00E-108 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008234 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity
SoyBase N/A ISS
KOG2605
KOG
OTU (ovarian tumor)-like cysteine protease
JGI ISS
PTHR12419 Panther
UNCHARACTERIZED
JGI ISS
PF02338 PFAM
OTU-like cysteine protease
JGI ISS
UniRef100_G7IA91 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-type peptidase n=1 Tax=Medicago truncatula RepID=G7IA91_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1LZ87 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ87_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g20730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g20730
Paralog Evidence Comments
Glyma10g06530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g20730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g144300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g20730
Coding sequences of Glyma13g20730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g20730.1 sequence type=CDS gene model=Glyma13g20730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGGTTATACGAGCATCCAGATGTTGTGCAGTGGGGTATTAATCTTTTTGACAGTGACCCTGCCTATAGTCCTGGATACTACAGTGACATAATTCAACATGATACTGGTGATGTCTATAATGGACACTACTACCATAGCCATTATGATACTGAAAGTAACCAAATACAAAATGATGAGATCATTGCACGGGCTCTTCAAGAAGAATTTTCCCGGCTAGATATTGCTGAGTGTTCAGGATATTCACAGACAGATGAAGAACAGTTCCATGCTTCTGAGCCTACATGTGATTGGAATAACACATCGATGATGAACTACTGTTCAGGTCATGATTATGCTTACAATGGAGTTGGTGACATAGAACCTTCTAGTTCATCATGTTGTAGTCCCTGTGAAGTAGAGGAAAGCTCATTGGAGCTTACAGACAATTATCCACTTGATGGTGAAATAGGGAGGAGACTGAGCCAGATGGTTCCAATTCCTCATGTTCCAAAAATTAATGGAGAAATTCCCTCAATAGATGAAGCCACTTCAGATCATCAAAGGCTTCTGGATAGATTGCAGTTATATGACTTTGTGGAGCATATGGTACAAGGTGATGGTAATTGTCAGTTCCGTGCATTGTCTGATCAATTGTATAACACACCTGATCACCACAAGTATGTGAGACGACAAGTTGTGAACAAGCTGAAGTCTCATCCAGAGATTTATGAGGGATATGTTCCCATGGAATATGCCGAATATTTGGAGAAGATGTCTAAGAGTGGTGAATGGGGGGATCATGTCACCCTTCAAGCAGCTGCAGATTCGTATGGCGTGAGAATATTTGTGATGACTTCTTTCAAGGATACGTGTTGCATAGAAATACTTCCTCATTTTGAGAAGCCAAAAGGAGTGATTTTCCTTAGTTTTTGGGCAGAGGTGCATTACAACTCCATCTATCCTCAAGGAGATATACCTTCAAGTGAGTCGAGAAAGAAGAAAAGGTGGTGGAACTTTGGGACTAAGCATTAA
Predicted protein sequences of Glyma13g20730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g20730.1 sequence type=predicted peptide gene model=Glyma13g20730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLYEHPDVVQWGINLFDSDPAYSPGYYSDIIQHDTGDVYNGHYYHSHYDTESNQIQNDEIIARALQEEFSRLDIAECSGYSQTDEEQFHASEPTCDWNNTSMMNYCSGHDYAYNGVGDIEPSSSSCCSPCEVEESSLELTDNYPLDGEIGRRLSQMVPIPHVPKINGEIPSIDEATSDHQRLLDRLQLYDFVEHMVQGDGNCQFRALSDQLYNTPDHHKYVRRQVVNKLKSHPEIYEGYVPMEYAEYLEKMSKSGEWGDHVTLQAAADSYGVRIFVMTSFKDTCCIEILPHFEKPKGVIFLSFWAEVHYNSIYPQGDIPSSESRKKKRWWNFGTKH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
