Glyma13g20630 - SoyBase

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Report for Sequence Feature Glyma13g20630

Feature Type:	gene_model
Chromosome:	Gm13
Start:	24112697
stop:	24113282
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09870	AT	Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family \| chr3:3027555-3027896 REVERSE LENGTH=113	SoyBase	E_val: 2.00E-25	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02519	PFAM	Auxin responsive protein	JGI		ISS
UniRef100_B9S0H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0H7_RICCO	SoyBase	E_val: 4.00E-33	ISS
UniRef100_I1LZ77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ77_SOYBN	SoyBase	E_val: 2.00E-72	ISS

Expression Patterns of Glyma13g20630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20630

Paralog	Evidence	Comments
Glyma10g06402	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g143100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20630

Limit To All Plant Sequences

>Glyma13g20630.1   sequence type=CDS   gene model=Glyma13g20630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACTTAGGACTTTTGTTGGGAAGATAGAAAGGGGTGTTTCACACTTTGTTCACAGAAGGCCTTCACTGAACTACTTGAGTGAAGCCACAACCACAAGTGTGGTGCCAGATGATGTTAGGGAAGGATATTTTGCTGTTCTTGCAACAAAGGGTGGAGAATCCAAAAGGTTCGTTGTTGGCTTACATTACTTGACTGATCCTGGTTTCTTGGGACTGCTAGATCAAGCTGAGGAAGAGTTTGGTTTCAGGCAAAAGGGAGCTCTTGCAATCCCTTGTCAGCCACAAGAGTTACAGAAAATTCTAGATGGTTGCAGAATGTAA

Predicted protein sequences of Glyma13g20630

Limit To All Plant Sequences

>Glyma13g20630.1   sequence type=predicted peptide   gene model=Glyma13g20630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLRTFVGKIERGVSHFVHRRPSLNYLSEATTTSVVPDDVREGYFAVLATKGGESKRFVVGLHYLTDPGFLGLLDQAEEEFGFRQKGALAIPCQPQELQKILDGCRM*

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