SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03370 | AT | Annotation by Michelle Graham. TAIR10: acylphosphatase family | chr5:825798-827020 REVERSE LENGTH=171 | SoyBase | E_val: 6.00E-41 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003998 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acylphosphatase activity | SoyBase | N/A | ISS |
| KOG3360 | KOG | Acylphosphatase | JGI | ISS | |
| PTHR10029 | Panther | ACYLPHOSPHATASE | JGI | ISS | |
| PTHR10029:SF3 | Panther | ACYLPHOSPHATASE | JGI | ISS | |
| PF00708 | PFAM | Acylphosphatase | JGI | ISS | |
| UniRef100_B9S0H5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acylphosphatase, putative n=1 Tax=Ricinus communis RepID=B9S0H5_RICCO | SoyBase | E_val: 1.00E-50 | ISS |
| UniRef100_I1LZ73 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZ73_SOYBN | SoyBase | E_val: 3.00E-102 | ISS |
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Glyma13g20571 not represented in the dataset |
Glyma13g20571 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g06270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g142500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20571.1 sequence type=CDS gene model=Glyma13g20571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAACACCTCCCTGACGGACGCCGCCGCCCTCGCGTCGCACCCCCTCCCCCACTCGAACGCGCCCCTCAGCGCGTGCTCAACACTTAACGCACCCGCCACCACCCTCCCGTTGTTCCCCTCCACCACGTTCGCCGTCATGTGCTTCCCCGACACAAACACCCTCAAAGCATACCTCATCATCATCCCCATCCCCCGCTCCCCAACCCATGGGCTTACACAATATAACTTGGGCCATAGTGGGCCTAGGCCCAATACAAATTACAAAAAAGAACAGAATCCCATTTTTTATTATCAATATCAGACCACGAACATGGCATTGGCAATGGGAATAATGGCATCAACTACGATTACGCTTATTCGTCCACCACTCACATTCCTCTCGTGTCGGAGTAACAATAATAATTCTAGTTCTAGTGTTAGCGCTGCTTCTAGAATCTTTCATTTCCGTTCAATCTCCGCTATGAGCACTCCGCAAGGCTCATCGGACTCGGCTTCCACCAAAACGGAGAGGGTGGTGATAAAGGGGAGGGTGCAGGGAGTGTTTTACAGGAACTGGACGATTGAGAACGCGACGCAATTAGGGTTGAAGGGGTGGGTGAGGAACCGGAGGGACGGGTCGGTGGAGGCTCTGTTCTCCGGGAGTGTTGACGCGGTGCAGGAAATGGAGCAGAGGTGTCGGCGTGGCCCTCCCGATGCGGTTGTCACCGGCCTTCAGGTTTTCCCCTCCGACGATGACCCTGCCACTACTGGGTTTCACCGCAAACCTACTCTTTGA
>Glyma13g20571.1 sequence type=predicted peptide gene model=Glyma13g20571 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANTSLTDAAALASHPLPHSNAPLSACSTLNAPATTLPLFPSTTFAVMCFPDTNTLKAYLIIIPIPRSPTHGLTQYNLGHSGPRPNTNYKKEQNPIFYYQYQTTNMALAMGIMASTTITLIRPPLTFLSCRSNNNNSSSSVSAASRIFHFRSISAMSTPQGSSDSASTKTERVVIKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEALFSGSVDAVQEMEQRCRRGPPDAVVTGLQVFPSDDDPATTGFHRKPTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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