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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33410 | AT | Annotation by Michelle Graham. TAIR10: SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504 | SoyBase | E_val: 0 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0032502 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental process | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0031965 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4521 | KOG | Nuclear pore complex, Nup160 component | JGI | ISS | |
| PTHR21286 | Panther | NUCLEAR PORE COMPLEX PROTEIN NUP160 | JGI | ISS | |
| PF11715 | PFAM | Nucleoporin Nup120/160 | JGI | ISS | |
| UniRef100_F4HR73 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Suppressor of auxin resistance1 protein n=1 Tax=Arabidopsis thaliana RepID=F4HR73_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CEDE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CEDE related cluster n=1 Tax=unknown RepID=UPI000233CEDE | SoyBase | E_val: 0 | ISS |
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Glyma13g20540 not represented in the dataset |
Glyma13g20540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g06230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g142200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20540.2 sequence type=CDS gene model=Glyma13g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAACCGGTTCGACCTTGGCCAGTAAGGAAGTTCCAATAGTCGGAAGCGACGCTGTTCGCTGGATCGATCTCTCCGTTCCGTCTTCCTCCAACATTGCCGCCGTTGACGACGGCGGCGCCGCCCCTCTCACCACCGACGACCGCGCCTCCTGCTTCGTCATCGGAGATCCTCCTACTTATCTTATCTGGAGAATTCACAAGGCTCAGCCTCACTCTCTCGAGTTGCTCGAACTCGCCGCTTCCAAAGAGTTTCCGCGCGTAGGACTCAGATTCACTTTCCCTGATGCGCTTTGCCCCTTCGCTTTCATCTGCAAAAACGAGATTTCTGGTGCTTCTAGAGTTCCTTACTTGCTTTACGTGTTGACTGTGTCTGGCGTGGCTTACCTATTGAAAATTCGAAATGTTTCTGTGTATGCGTCCGTTTCTGTTTTCCCCGTGGATGAGCTTTTGGAGGTTAATGTGCGTGGTTACATTCCCAATCATGCTGCCACGATAACTGCCGTGACAGCAACCGTCGGGGGTCTTGTTGTTGGCACAAGTGATGGTTCTGTTTTCTGTTTCCAGCTTGGTGTACTCGACTCTAGTGCTCCTGGTTTCATGCATGAGCTGAGAGATGATGCTGGAATCAGTCGCTTGTGGGGTTTAATATCACGGGGGAAAATGGTGGGTACTGTACAAGAGTTGGCGATTTTGGAGTTACATGAGAAAAAGTTTGTGTTTGTGCTTCATTTGGATGGGACGTTACGAATTTGGGATCTTGCATCTCATAGCAGGGTTTTTAGTAATAACATGGGGACTATGGCAATGGCAGGTGCTACCTTTGTAAGGTTATGGGTGGGTCAACCTTACCCAGATTCTAGTGTAATTCCTTTGGCAGTTTTGTACAGAGACACATTGGATGAAAGCTTGGAGATGATCTCTTTATATAGCGTCCTATTTAATTTTGGGGACAGAATTGTTTTTTCTATGGAGCCTTCAGTGCAAAACATTCCCCTGGAGGAGGGACGATGCCTTGATGTTAAATTAACATTGGATAAGATATGGATACTGAAGGATGATGAATTAGTCTCACACACGTTGTCTACAAATATTGACGAGGTAGAAGCATTTTCTCATGCTTTACAGGAAGAATTTGTTGCTGATCAACTATTTCAAAGTTCAGAGCATCTTGCTGATGAAATTTTGCAGATCACACATTCAATATTTTCATCTTCGAAGGATGATATTTTGCCTTTTGTATCTTCTATTTTCTTAAGAAGGCTGCTTCTTCCTGGGGTTCATCATAATGCTACTTTGTATGCTACTCTAGTTGAGTATAGCAGGCATTTGGGTGAATCTGAGTTGCAAACATTAACCACTGATGGGCTAAAAAAGGAGATACTTTCACTCATAGAACATGAGGTTGGATCTGAAAAAGTGTCTTTATTGCACTGCTGGAAATGTTTTTTCACCCGGTATTTCCATAATTGGTGCAAGAACAATGCGTTATATGGTTTGCTTGTTGATTCCTCTTCTGATGCCGTTGGTTTAATCAGAAAAAAATCCATTTCACTTTTTCGGTCTTTGGAAGATATTGAACGGATTGTGGAGGGCTCTTCAGACGAAGTTAGTGAGCTCACAGGCCTTGTGGATATATTTGACGATGATCTGGAGTGTGAAATTCTAATCGAATTGCTCAGATGTGTTATAAGTTTCAGCCAACAGTTGGGCAAAACTGCTTCTTCTATATTTTATGAATCTCTTTTAACTACATCATTGATCTCTTCTGAAGATATTGTTTGCTATATTGTTAAGATTCTGGAAACTGGATATTGTATGTCTGGTCCAGTGCTTCAAACTTCTACTTCTGGGAATCATATAGTTGTTCTGGAGAAGGAGCTAGCTGATCATAAAAGTTTGAGGAAACTTTCTGTTGATATGTTTTTATCGCTTCAAGGCTTGCACAAAAAGGCTTCTGAATGGGGCAGGATTTTAAAAGTAATTGAGGGTTTCCTGAAATTTTTGGTTCCACAGAAAGTAATACAAAATTTTAATACTGAAGTGTCATCAAACATAAATTCTTCTGTTATAGTACATACTACTTATCAGATTGCAAAGGTGATGTTTGAATCTGCCTGGGACTTTCTTCTATTTTTAAGCTATTTGGTGGACATCAGTGGTCAGGTCCACTTGTCACATGATGATATAAACAAAGTACAGCTTGAGTTAGTTCCGATGCTTCAAGAAATTATTTTTGAATGGCTAATCATCATCTTCTTTACCATCACACCGTCTGCACCGGCTGTAACTGAAGACTTCAATTCTAAACTTTCATCATTACAAATAGATAACAACATGGGGAAACAATTATGGAATGAGAAGCTTGGCAGATGTGACTTTACATTGGCTTTTATATTCTTGCTCAACGTTGGAAGTTCATCCATAGATCATAGCCACGTTTCTTCAGAACATTTTTCAAATGTGCAGAGTTTTATTAATAAGACAAGAGACTTCATCAGTTGGATTATTTGGGGCCAGGCTGGAGGATCTTCTACTTTCTTGAGCCGTTCTATTGATCTTGCATTTATACTTTTCAAGCATGGCCAGTATGGTGCTGCTGAGCAATTGCTTATGATTGCGGAAGCACATTTACTAAAAGAGAAGACATCCCAAAGTATTCAAGATGATGATGGTGGATGGTGCATACGCCATCATCTTCTAGGATGTTGCTTACTTGCACAGGTGCAATGTGGATTACATGCAACCCAGAAGGATAAAAAAGTTTCTGAGGCCATTCGCTGCTTTTTTAGGTCTTCATCTGGAAATGGTGCATCTGAGGCTCTGCAGAGTTTATCTGATGACTTAGGAATTCCATATCTTGGCTTTAGTGGTTGTACATCAATTGCTGCATGGAAGCTTCAATACTATCAATGGGCAATGCAGTTATTTGAACGTTATAGCATTAGTGAAGGTGCTTGCCAGTTTGCTCTTGCTGCACTTGAGCAAGTTGATGAGGCTCTATATATGAAAGATGACAAGTGCACAAACAACTCAGTTAATGAATCAGTGACAACCATCAAAGGACGACTATGGGCAAATGTTTTCATATTTGCGTTAGACCTTGGTCGATTTTATGATGCATATTGTGCAATAATTTCAAATCCAGATGAGGAGAGCAAATACATCTGCTTGAGACGTTTCATAATTGTTCTTTATGAACAAGGAGCTATAAAGATTCTTTGCAGCGATAAACTTCCCCTTATTGGTTTAGTGGAGAAAGTGGAGCAAGAGCTTGTGTGGAAGGCTGATCGATCAGATATTTCTGTGAAGCCAAACTTGTATAAGTTGCTTTATGCATTTCAATTGCACCGGCATAATTGGCGACAAGCAGCAAGCTACATGTACATGTATTCCGCTCGTTTGAGAACTGAAGCAGCTTTGAAAGATTGTGTAGGCAGTTCCTTGATGTTGCAAGAGAGGCTGAATGCACTCTCTGCTGCAGTCAATGCACTGCATCTTGTTCATCCTGCATATGCCTGGATTGATTCATTAGCTGAGGGAAGTTCTATTGTGAATGAACATTATCCAAGTAAGAAAGCTAAAAGAACCCCAGATGAACATTCAGCAGCTGATAATGATGCTGAGCCTCAAGGTTGGCAGTCCTCTATTGATATTGAAAAACTTGAGAATGAGTTTGTGCTAACTTCAGCAGAGTATATGCTGTCACTGGTAAATATCAAGTGGACATTTTCTGGAAAACACGGAGCTCTATCAGACTTGGCTGATCTTCTTGTCCAAAACAGTTTATATGATATGGCTTTTACAATCCTTTTCAGATTTTTCAAGGGTTCTGGACTGAAGAGGGAACTGGAAAGAGTGTTGTCTGCTATCTCATTGAAATGCTGTCTTGACAAAGTGGAATCAACTTGGGTTGAGGAACACAGTCATTTATTGAACTCATCAAAGCATGAGATGGTCGTCCATGGTTCACCTGTTACAGTTTCCTCGACTCCACAAACTGACAGAAACAGTCGTTGGGCAACACTCAAGCTTTACCTTGAAAAGTATAAGGAACTTCATGGTAGATTACCGATTATTGTTGCCGAAACTCTTCTACGCTCAGATCCTAAGATTGAATTACCTCTTTGGCTTGTACAATTGTTCAAGGAGGGTCAAAAAGAAAGGTCGTGGGGGATGACTGGCAGGGAATCAAATCCTGCATCTTTATTTCAGCTTTATGTTAGCTATGATCGATATGCAGAAGCTACTTATCTTTTGCTCGAGTGCATAGACTCATTTGCTTCAATGAGACCAGCAGATATAATTAGAAGGAAAAGACCATTAGCTGTTTGGTTCCCATACACAACTATTGAGCGGCTACTATACCAACTTGAGGAATTAATCAGAATGGGCCACATGGTAGATCACTGTGACAAGCTCAAAAAAATGTTACATGGTTCTTTACAGAATCATCTGAAGATGTTGAAGGTGGACTCTGATGATGCTGTTTCTGTATCTTCTTGA
>Glyma13g20540.2 sequence type=predicted peptide gene model=Glyma13g20540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTGSTLASKEVPIVGSDAVRWIDLSVPSSSNIAAVDDGGAAPLTTDDRASCFVIGDPPTYLIWRIHKAQPHSLELLELAASKEFPRVGLRFTFPDALCPFAFICKNEISGASRVPYLLYVLTVSGVAYLLKIRNVSVYASVSVFPVDELLEVNVRGYIPNHAATITAVTATVGGLVVGTSDGSVFCFQLGVLDSSAPGFMHELRDDAGISRLWGLISRGKMVGTVQELAILELHEKKFVFVLHLDGTLRIWDLASHSRVFSNNMGTMAMAGATFVRLWVGQPYPDSSVIPLAVLYRDTLDESLEMISLYSVLFNFGDRIVFSMEPSVQNIPLEEGRCLDVKLTLDKIWILKDDELVSHTLSTNIDEVEAFSHALQEEFVADQLFQSSEHLADEILQITHSIFSSSKDDILPFVSSIFLRRLLLPGVHHNATLYATLVEYSRHLGESELQTLTTDGLKKEILSLIEHEVGSEKVSLLHCWKCFFTRYFHNWCKNNALYGLLVDSSSDAVGLIRKKSISLFRSLEDIERIVEGSSDEVSELTGLVDIFDDDLECEILIELLRCVISFSQQLGKTASSIFYESLLTTSLISSEDIVCYIVKILETGYCMSGPVLQTSTSGNHIVVLEKELADHKSLRKLSVDMFLSLQGLHKKASEWGRILKVIEGFLKFLVPQKVIQNFNTEVSSNINSSVIVHTTYQIAKVMFESAWDFLLFLSYLVDISGQVHLSHDDINKVQLELVPMLQEIIFEWLIIIFFTITPSAPAVTEDFNSKLSSLQIDNNMGKQLWNEKLGRCDFTLAFIFLLNVGSSSIDHSHVSSEHFSNVQSFINKTRDFISWIIWGQAGGSSTFLSRSIDLAFILFKHGQYGAAEQLLMIAEAHLLKEKTSQSIQDDDGGWCIRHHLLGCCLLAQVQCGLHATQKDKKVSEAIRCFFRSSSGNGASEALQSLSDDLGIPYLGFSGCTSIAAWKLQYYQWAMQLFERYSISEGACQFALAALEQVDEALYMKDDKCTNNSVNESVTTIKGRLWANVFIFALDLGRFYDAYCAIISNPDEESKYICLRRFIIVLYEQGAIKILCSDKLPLIGLVEKVEQELVWKADRSDISVKPNLYKLLYAFQLHRHNWRQAASYMYMYSARLRTEAALKDCVGSSLMLQERLNALSAAVNALHLVHPAYAWIDSLAEGSSIVNEHYPSKKAKRTPDEHSAADNDAEPQGWQSSIDIEKLENEFVLTSAEYMLSLVNIKWTFSGKHGALSDLADLLVQNSLYDMAFTILFRFFKGSGLKRELERVLSAISLKCCLDKVESTWVEEHSHLLNSSKHEMVVHGSPVTVSSTPQTDRNSRWATLKLYLEKYKELHGRLPIIVAETLLRSDPKIELPLWLVQLFKEGQKERSWGMTGRESNPASLFQLYVSYDRYAEATYLLLECIDSFASMRPADIIRRKRPLAVWFPYTTIERLLYQLEELIRMGHMVDHCDKLKKMLHGSLQNHLKMLKVDSDDAVSVSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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