SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36885 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | chr2:15482167-15483676 REVERSE LENGTH=256 | SoyBase | E_val: 9.00E-97 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LZ63 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ63_SOYBN | SoyBase | E_val: 5.00E-173 | ISS |
| UniRef100_Q8S8F1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q8S8F1_ARATH | SoyBase | E_val: 4.00E-94 | ISS |
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Glyma13g20490 not represented in the dataset |
Glyma13g20490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g141700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20490.2 sequence type=CDS gene model=Glyma13g20490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATCATTCTGTGACTCCACTCACACTTCCAGAGCACAGTTGCAGCGCTTTTTTTGTCTTTTCTTTGGTTCTGTTTTGCCGCATTAACAAAATGGCAATGGCAATGGCAGCAATTGCTTCTTCTCTCGGCGTGGGTCTCCGTCCTCTTTCTCTGTCTTCTCCCTCCTCAGCACTGTTCCAGTCCCGCCACTCCTTCACTATAACAACCACAACACCCAAGTGCTGCCTCGCACCAAAACAAGACTCACCCCTGGAACTGGAACTAGTGAAATCAACACAGAACACCCAAATCATCTTACACTCTTTCTCTCCATTCCCATTGCTCTGCGCCGCTGCTCTCTTACCCGGAAGTGAAGCGGTAACATCTGTGTTTGGGCCTTTCGTTGAGCTCGTCAAGTCGTGGAATCTCCCAGACTGGCTCGTCCATTGGGGCCACCCTGGCAACATGGCCGTTGTGCTCTTTGCCATGGGTGGCTACGGTACCTATCTGGGTTTTCGCATTCGTTATTCTGATAATCTGGAGGAAAAGGCTAAGGCCAAGGATTTGCATCCCAAGCTTTTAGCTGGTATGTTTTTCTTCTTTGCTCTTGGAGCTACTGGTGGAATTACAGCTCTACTCACTTCGGATAAACCCATTTTTGAGAGTCCTCACGCTGTTACAGGAGTCATTGGTCTTGCTTTGTTGACAATACAAACTATACTGCCTACACTCTTTGAGGGAAATCCTGGACTAAGGAATGTTCATGGTATCCTGGGTAGTGGTATCATGACACTTTTTCTTGTTCATTTTGCCCTTGGACTTCAACTAGGCTTCAGTTACTAA
>Glyma13g20490.2 sequence type=predicted peptide gene model=Glyma13g20490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high HHSVTPLTLPEHSCSAFFVFSLVLFCRINKMAMAMAAIASSLGVGLRPLSLSSPSSALFQSRHSFTITTTTPKCCLAPKQDSPLELELVKSTQNTQIILHSFSPFPLLCAAALLPGSEAVTSVFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDNLEEKAKAKDLHPKLLAGMFFFFALGATGGITALLTSDKPIFESPHAVTGVIGLALLTIQTILPTLFEGNPGLRNVHGILGSGIMTLFLVHFALGLQLGFSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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