Glyma13g20460 - SoyBase

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Report for Sequence Feature Glyma13g20460

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23919030
stop:	23921249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22410	AT	Annotation by Michelle Graham. TAIR10: SLOW GROWTH 1 \| chr2:9509035-9511080 FORWARD LENGTH=681	SoyBase	E_val: 2.00E-146	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7LII9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7LII9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CD7A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CD7A related cluster n=1 Tax=unknown RepID=UPI000233CD7A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g20460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20460

Paralog	Evidence	Comments
Glyma10g06150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g141400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20460

Limit To All Plant Sequences

>Glyma13g20460.1   sequence type=CDS   gene model=Glyma13g20460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTTTGAAAACACTGTTATCATCATGCAGAACCATTCACCAAGCGCTTCAAATCCACGCCCAAATGGTGGTCACAGGGCGCCACCACGACCCATTCCTCATGACACCACTCATCTCTTTCTTCGCCGCCGCCAACAGCAACGCTCTTCACCACTCCCATCTTCTCTTCACCCAAATCCCAAACCCTGATCTCTTCCTCTTCAACCTCATCATCAGAGCCTTCTCTCTCTCCCAAACCCCCCACAACGCTCTCTCTCTATATAAAAAAATGCTATCTTCTTCCCCACCCATATTCCCTGACACCTTCACCTTTCCCTTCCTCCTCAAGTCCTGCGCCAAGCTTTCGCTTCCCAGACTCGGCCTTCAGGTCCATACCCACGTTTTCAAAAGTGGGTTTGAGTCCAATGTTTTTGTTGTCAACGCGCTTTTGCAGGTGTACTTTGTTTTCGGGGATGCCCGTAATGCCTGCAGGGTGTTTGATGAAAGTCCTGTGAGGGATTCTGTTTCGTATAACACGGTGATTAATGGGCTTGTGCGTGCGGGTCGCGCTGGTTGTTCTATGAGGATTTTTGCGGAGATGAGAGGGGGTTTTGTTGAGCCTGATGAGTATACCTTCGTTGCGTTGTTGTCGGCTTGTTCTTTGTTGGAGGATCGTGGGATTGGGAGGGTGGTGCATGGGTTGGTGTATAGGAAATTGGGTTGTTTTGGCGAGAATGAGTTGTTGGTGAATGCGCTTGTTGATATGTACGCGAAATGTGGGTGTTTGGAGGTGGCCGAGAGAGTTGTGAGAAATGGGAATGGGAAGAGTGGTGTTGCGGCTTGGACTTCTTTGGTGAGTGCATATGCTTTGCGTGGGGAGGTTGAGGTTGCAAGAAGGTTGTTTGATCAAATGGGGGAGAGAGATGTGGTTTCTTGGACGGCTATGATCAGTGGCTACTGCCATGCCGGGTGTTTTCAGGAAGCACTGGAACTGTTTGTGGAGTTGGAGGATTTGGGGATGGAACCGGACGAGGTTGTGGTGGTTGCTGCTCTTTCGGCATGCGCACGGCTTGGTGCCCTTGAGTTGGGAAGAAGGATCCACCACAAGTATGATCGTGATAGTTGGCAGTGTGGTCACAACAGGGGATTCACTTGTGCTGTTGTGGATATGTATGCCAAGTGTGGAAGCATAGAGGCTGCTTTGGATGTGTTCCTCAAAACAAGCGATGATATGAAAACTACTTTTCTCTATAACTCCATTATGTCTGGCCTTGCTCATCATGGCCGTGGTGAACATGCCATGGCTTTGTTTGAAGAAATGAGGTTGGTGGGTTTAGAGCCAGATGAGGTCACATATGTAGCACTTTTATGTGCCTGTGGGCATAGTGGTCTGGTTGATCATGGCAAGAGGCTGTTTGAGTCCATGTTGAGTGAGTATGGTGTTAATCCTCAGATGGAGCACTATGGCTGTATGGTTGATCTTCTTGGTAGGGCTGGTCATTTGAATGAAGCATATCTTTTGATTCAGAATATGCCGTTCAAGGCCAATGCTGTGATATGGAGAGCATTGTTGAGTGCTTGCAAAGTAGATGGAGATGTGGAATTGGCTAGACTTGCCAGTCAAGAGCTTCTTGCAATGGAGAATGATCATGGGGCCCGTTATGTGATGCTATCTAATATGTTAACTCTCATGGATAAGCATGATGAAGCTGCAAGTGTGAGAAGGGCAATTGATAATGTTGGCATCCAGAAGCCACCTGGTTGGAGCCATGTGGAAATGAATGGAACTCTTCACAAATTTCTGGCTGGTGATAAATCTCACCCGGAGGCCAAAGCAACTGAGTTCATGCTCAGGGACATTGATATGGGACTGAAATCTATTGGGCATAGTATTAGTGTATCAAAAATGGTGTTTGATGTAGATTAA

Predicted protein sequences of Glyma13g20460

Limit To All Plant Sequences

>Glyma13g20460.1   sequence type=predicted peptide   gene model=Glyma13g20460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGLKTLLSSCRTIHQALQIHAQMVVTGRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSISVSKMVFDVD*

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