Glyma13g20374 - SoyBase

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Report for Sequence Feature Glyma13g20374

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23820334
stop:	23821529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20374

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30080	AT	Annotation by Michelle Graham. TAIR10: auxin response factor 16 \| chr4:14703369-14705564 REVERSE LENGTH=670	SoyBase	E_val: 4.00E-38	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0009725	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0048829	GO-bp	Annotation by Michelle Graham. GO Biological Process: root cap development	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0035198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: miRNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_B9S0L2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor, putative n=1 Tax=Ricinus communis RepID=B9S0L2_RICCO	SoyBase	E_val: 3.00E-41	ISS
UniRef100_UPI000233CD78	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CD78 related cluster n=1 Tax=unknown RepID=UPI000233CD78	SoyBase	E_val: 7.00E-56	ISS

Expression Patterns of Glyma13g20374

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g20374 not represented in the dataset	Glyma13g20374 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g20374 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g140500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20374

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20374

Limit To All Plant Sequences

>Glyma13g20374.1   sequence type=CDS   gene model=Glyma13g20374   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTGGCCATTGTAAAGTTTTTATGGAGTCCGAAGATGTAGGCCGAACTATGGACCTATCGTTGCTTCGATCTTACGATGAATTACATAGAAAGTTGGCAGACATGTTTGGCATAGAAAAATCTGAAATGTTAAGTAGGGTGCTTTACTGCGATTCAGTTGGGGCTATCAAACACATTGGTGATGAGCCATTCAGTGACTTCACAAGAACAGCCAAAAGGTTGACTATTCTAATGGATTCTGGCAGCAACAATGTAGGAGTGTAG

Predicted protein sequences of Glyma13g20374

Limit To All Plant Sequences

>Glyma13g20374.1   sequence type=predicted peptide   gene model=Glyma13g20374   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGHCKVFMESEDVGRTMDLSLLRSYDELHRKLADMFGIEKSEMLSRVLYCDSVGAIKHIGDEPFSDFTRTAKRLTILMDSGSNNVGV*

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