SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01390 | AT | Annotation by Michelle Graham. TAIR10: vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110 | SoyBase | E_val: 5.00E-43 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0015991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport | SoyBase | N/A | ISS |
| GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016469 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proton-transporting two-sector ATPase complex | SoyBase | N/A | ISS |
| GO:0016471 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar proton-transporting V-type ATPase complex | SoyBase | N/A | ISS |
| GO:0046933 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism | SoyBase | N/A | ISS |
| KOG1772 | KOG | Vacuolar H+-ATPase V1 sector, subunit G | JGI | ISS | |
| PTHR12713 | Panther | VACUOLAR ATP SYNTHASE SUBUNIT G | JGI | ISS | |
| PTHR12713:SF1 | Panther | VACUOLAR ATP SYNTHASE SUBUNIT G | JGI | ISS | |
| PF03179 | PFAM | Vacuolar (H+)-ATPase G subunit | JGI | ISS | |
| UniRef100_B9SUA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar ATP synthase subunit G plant, putative n=1 Tax=Ricinus communis RepID=B9SUA9_RICCO | SoyBase | E_val: 2.00E-53 | ISS |
| UniRef100_C6SZU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZU9_SOYBN | SoyBase | E_val: 8.00E-71 | ISS |
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Glyma13g20310 not represented in the dataset |
Glyma13g20310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g06010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g139900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20310.2 sequence type=transcript gene model=Glyma13g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTGTTTGACAGCACAGCACTCGGAAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGTTAGTGCTTGTATTCATCACAGAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCAAAAAATGAAAAATTGGCTAGGTTGAAACAGGCCAAGGAAGAGGCTGAAAAGGAGATTGCTGAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGACAGTACTGGAGATTCTGGAGCTAATGTCAAGCGGCTTGAGCAAGAGACCGAAGAAAAAATCCATCACCTGAAAACGGAGGCTGCAAGAATATCGGATGATGTTGTCGCCATGCTCCTCAAGTATGTGACAAGTGTGAAAAATTAGGACCCTTTGATATATATTGGTGCTGAGGACTCCTAAATTATGATGATTATTATTCTGAGTTGATTTTTTACTCTAGATATTCTGGTGCGGGTGAGCTTCTTGTTTTGGTTACAACGCTTAGTACCTTGCTGCATTGTACTCAGTCCGAAATGACTTCAAATTTGTTAAATAATCACTTCAGAATTAAAAGGCGAGTGTATTTTGTGTTGCTGTTTTAACGAGTGTTTGAGGACTAGTTCCACCCTTGGATATGAATGTAAAGTCGAAATGCATGGCATATAATAATAATCAATGTTTTGAAAATCGGTCCACAACTGGTTAAGACTGGTAT
>Glyma13g20310.1 sequence type=CDS gene model=Glyma13g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCAAAAAATGAAAAATTGGCTAGGTTGAAACAGGCCAAGGAAGAGGCTGAAAAGGAGATTGCTGAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGACAGTACTGGAGATTCTGGAGCTAATGTCAAGCGGCTTGAGCAAGAGACCGAAGAAAAAATCCATCACCTGAAAACGGAGGCTGCAAGAATATCGGATGATGTTGTCGCCATGCTCCTCAAGTATGTGACAAGTGTGAAAAATTAG >Glyma13g20310.2 sequence type=CDS gene model=Glyma13g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCAAAAAATGAAAAATTGGCTAGGTTGAAACAGGCCAAGGAAGAGGCTGAAAAGGAGATTGCTGAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGACAGTACTGGAGATTCTGGAGCTAATGTCAAGCGGCTTGAGCAAGAGACCGAAGAAAAAATCCATCACCTGAAAACGGAGGCTGCAAGAATATCGGATGATGTTGTCGCCATGCTCCTCAAGTATGTGACAAGTGTGAAAAATTAG
>Glyma13g20310.1 sequence type=predicted peptide gene model=Glyma13g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEAEFQKKVSDSTGDSGANVKRLEQETEEKIHHLKTEAARISDDVVAMLLKYVTSVKN* >Glyma13g20310.2 sequence type=predicted peptide gene model=Glyma13g20310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEAEFQKKVSDSTGDSGANVKRLEQETEEKIHHLKTEAARISDDVVAMLLKYVTSVKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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