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Report for Sequence Feature Glyma13g20280

Feature Type:gene_model
Chromosome:Gm13
Start:23731195
stop:23733664
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g20280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16670AT Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390 SoyBaseE_val: 5.00E-110ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_B9S0M3UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0M3_RICCO SoyBaseE_val: 1.00E-141ISS
UniRef100_UPI000233CD74UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CD74 related cluster n=1 Tax=unknown RepID=UPI000233CD74 SoyBaseE_val: 0ISS

Expression Patterns of Glyma13g20280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20280
ParalogEvidenceComments
Glyma10g05990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g139500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g20280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g20280
>Glyma13g20280.2   sequence type=CDS   gene model=Glyma13g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTTCTCATTTTCTCCACACGCTCTCCCTCTCCAAAACCTTCACATATACCCCGAAACACCAACATCCAACGGAGTGTTGTTAGGTTACGCTTATTTCAAGACATGAAGATTCCTTGTTTTTCTTGTTTCTTGCCATCGACCACTGAAGAAAACAACAACAACAACGACTACCCAGATGAAGATGGGAGCTTTCGTTTGTTCACTTACAACCAATTGAAATTAGCCACGTGCAATTTTCATTCCTCGGAGAAGGTTGGAGAAGGAGGCTTTGGATCTGTCTTTAAGGGGAAGCTTGTAGATGGATCTTTTGTGGCGGTGAAAGTGCTTTCGGTTGAGGTGGAATCCATGCGAGGAGAGAGGGAATTTGTGGCGGAATTGGCTACACTTGCAAACATCAAGCACCAAAATCTTGTAAGCCTAAAAGGGTGTTGTGTGGAAGGTGTTCATAGATATTTGGTCTATGATTATATGGAGAACAATAGCCTCTACAACGCTTTCTTAGGTTCGGAGGAGAGAAGGATGAAATTCACTTGGGAAAGAAGGAGGGACATATCCATAGGTGTGGCTCGGGGACTTGACTTTCTTCATGAGCAGCTTAAGCCTCATATCGTACATAGAGACATCAAAGCAAAAAACATACTTCTTGATAGTAATTTCATACCAAAGGTTTCTGATTTTGGTTTGGCAAAATTGCTGAGAGATGAAACATCTCACATTAGCACTCGGGTTGCAGGGACATTGGGTTATCTAGCTCCAGAATATGCAAATTCTGGCCAGGTTTCGCGAAAATCAGATGTTTATAGCTTCGGAGTGTTACTTTTACAAATTGTGAGTGGCCTAGCAGTGGTGGATGCCTATCAAGACATAGAACGTTTCATAGTGGAGAAGGCGTGGACAGCGTATCAAGGTAACGATCTACTAAAGCTGGTGGATCCCATGCTTAATATGAATTTTCCAGAGGAAGAGGCCTTGAAATTCCTCAAGTTAGGGCTGCTTTGCGTGCAAGAAACTGCCAAGTTTCGGCCGCCAATGTCAGAGGTTCTAGAGAGATTGACCAAGGACATTGACATGATAGATGTTCACATTTCGAAACCAGGGTTCGTGGCTGATCTTAGGAACATCAGAATCAAACAACAAAACCTTAACTCGTCCCAGGAATCAAGTTCTGCTGGAGCAACCTTTACAAGCTCCATTTGGAGTTCGGTCAATCTTGCTCGTTAA
Predicted protein sequences of Glyma13g20280
>Glyma13g20280.2   sequence type=predicted peptide   gene model=Glyma13g20280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFLIFSTRSPSPKPSHIPRNTNIQRSVVRLRLFQDMKIPCFSCFLPSTTEENNNNNDYPDEDGSFRLFTYNQLKLATCNFHSSEKVGEGGFGSVFKGKLVDGSFVAVKVLSVEVESMRGEREFVAELATLANIKHQNLVSLKGCCVEGVHRYLVYDYMENNSLYNAFLGSEERRMKFTWERRRDISIGVARGLDFLHEQLKPHIVHRDIKAKNILLDSNFIPKVSDFGLAKLLRDETSHISTRVAGTLGYLAPEYANSGQVSRKSDVYSFGVLLLQIVSGLAVVDAYQDIERFIVEKAWTAYQGNDLLKLVDPMLNMNFPEEEALKFLKLGLLCVQETAKFRPPMSEVLERLTKDIDMIDVHISKPGFVADLRNIRIKQQNLNSSQESSSAGATFTSSIWSSVNLAR*






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