Glyma13g20240 - SoyBase

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Report for Sequence Feature Glyma13g20240

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23684319
stop:	23690856
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37160	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr2:15609047-15612529 FORWARD LENGTH=544	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG2394	KOG	WD40 protein DMR-N9	JGI		ISS
PTHR14107	Panther	WD REPEAT PROTEIN	JGI		ISS
PTHR14107:SF1	Panther	WD-REPEAT DMR-N9 - RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7L2S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L2S1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ADB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ADB5 related cluster n=1 Tax=unknown RepID=UPI000233ADB5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g20240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20240

Paralog	Evidence	Comments
Glyma10g05890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g139100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20240

Limit To All Plant Sequences

>Glyma13g20240.1   sequence type=CDS   gene model=Glyma13g20240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATGCAAACGGCTTGATTTCGACGACGTCGTCTAATACGGCACAGTCACAATCCACTGGCCTCAAGACGTATTTCAAGACTCACGAAGGCCGGTACAAGCTTTATTACGATAAGACTTACCCTTCCACTCTTCTTCACTACGCTCATGGCAAAACCGTTTCTCAGGTTACTCTGGCACATCTCAAGGACAAGCCGGTGCCTTCGACGCCGACTGGGCAGTCTTCAACTTTCAGTGCCACCAGTGGGGTAAGGTCAGCGGCGGTGAGATTGTGGGGAGGAAGCAATGGAGGCCGGTCTCTTAGTTTTGTTGGAGGCAATGGTACCAGCAAGAACCTTGGGGGGAACTCTAGGATTGGTTCGATTGGTGCTTCTAGTTCAAGTAATGCAACGTCTAATTCAAATTTTGATGGGAAAGGAACTTACTTGATCTTCAATGTCGGGGATGCAATTTTTATAAGTGATTTGAATTCACAAGACAAGGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTATGTGCCATGCATTTGATCAGGATTCTAAGGATGGGCATGATTTGATCATTGGCTTGAATACCGGCGATGTTTACTCAGTGTCACTGAGACAACAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCATTGTACTTGTATTGCTTGGGTTCCTGGAGGTGATGGTGCCTTTGTTGTAGGTCATGCTGATGGGAATTTGTATGTATATGAAAAGAACAGAGATGGTGCTGGTGATTCTTCATTCACGGTTGTCAAAGATCAAACACAATTTTCTGTTTCCCATGCACGTTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGTTCAATTGACAGTATTTCTTTCTCAACTGATGGGACTTACATAGCTACTGTTGGACGAGATGGTTATTTACGAGTATTTGATTACTTAAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAGTATATTTTGACGGGGGGAGAGGATGATTTAGTTCAAGTTTGGAGTATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGGCACAACTCATGGGTCAGCGGTGTGGCTTTTGATTCATATTGGTCATCACCTAATTCAAATGACAATGAAGAGACTGTTAGATATCGATTTGGTTCCGTTGGTCAGGACACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTGGTACCCTTGCGACGTCCTTCTGGTGGATCCCCAACTTACAGTGCTGGAAGCCAGTCTTCCCAATGGGACAGTGTTGTCCCGTTGGGTACCTTGCAGCCTGCTCCTAGTATGCTGGATGTTCTGAAAATCTCTCCACTCGTTACCCACCGTGTTCATACTGAACCACTCTCAGGCTTGATATTTACCCAGGAATCTGTACTTACTGCCTGTCGGGAGGGGCACATAAAAATCTGGATTAGACCTGCAGCTGCTGAGAGCCAATCAAGCAACGCTGAAACTCTCTTATCTACCAGCCTTAAGGAGAAGCCTTCAATTTTGAGTAAGGTTGGCAATTCTAGCCACAGACAATGA

Predicted protein sequences of Glyma13g20240

Limit To All Plant Sequences

>Glyma13g20240.1   sequence type=predicted peptide   gene model=Glyma13g20240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNANGLISTTSSNTAQSQSTGLKTYFKTHEGRYKLYYDKTYPSTLLHYAHGKTVSQVTLAHLKDKPVPSTPTGQSSTFSATSGVRSAAVRLWGGSNGGRSLSFVGGNGTSKNLGGNSRIGSIGASSSSNATSNSNFDGKGTYLIFNVGDAIFISDLNSQDKDPVKSIHFSNSNPMCHAFDQDSKDGHDLIIGLNTGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSHCTCIAWVPGGDGAFVVGHADGNLYVYEKNRDGAGDSSFTVVKDQTQFSVSHARYSKSNPIARWHICQGSIDSISFSTDGTYIATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNEETVRYRFGSVGQDTQLLLWDLEMDEIVVPLRRPSGGSPTYSAGSQSSQWDSVVPLGTLQPAPSMLDVLKISPLVTHRVHTEPLSGLIFTQESVLTACREGHIKIWIRPAAAESQSSNAETLLSTSLKEKPSILSKVGNSSHRQ*

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