Glyma13g20220 - SoyBase

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Report for Sequence Feature Glyma13g20220

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23649868
stop:	23653774
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09740	AT	Annotation by Michelle Graham. TAIR10: syntaxin of plants 71 \| chr3:2989615-2991354 FORWARD LENGTH=266	SoyBase	E_val: 2.00E-153	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005484	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
KOG3202	KOG	SNARE protein TLG1/Syntaxin 6	JGI		ISS
PTHR12380	Panther	SYNTAXIN	JGI		ISS
PTHR12380:SF24	Panther	OS05G0553700 PROTEIN	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_B9S0N2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin, putative n=1 Tax=Ricinus communis RepID=B9S0N2_RICCO	SoyBase	E_val: 1.00E-164	ISS
UniRef100_I1LZ35	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ35_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g20220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g20220 not represented in the dataset	Glyma13g20220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20220

Paralog	Evidence	Comments
Glyma10g05870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g138900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g20220

Limit To All Plant Sequences

>Glyma13g20220.2   sequence type=transcript   gene model=Glyma13g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAATGTAGAAATTAAAGACATATTTTTCTCTAAATTTAAAAAATCGAAAAATTAAAGTGACCCAGAGCCACTGGCCACTGGTACTGGTAAACTGCTAAGTGCTAACGTCGGGTTTAGTCAATTTTAACCATAGCAAACACGGTAAATTGAAGACCGATTGGATCAATTTTCCCACACACTTGAGAGTCAAAGCTGTTAACTTTCCCCTTTGAAATCCTTTCTGAGTTCTGCGCCAACTGAATCAAGCAGATCGAACTCCGCCATAGTCTTCATCGAGACAGAGATCGGAATCTGATTCCCAAACGGCAACAGTATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAATACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCCTCCCGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTTATGGACGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGATATGTACAAAGGCTGATGGATGTTCGAATGGTTTGCCTTTACTTGTATTTTGAGAATATCGTCTGATTTTATTTTTTTTATCTCTACCGTTGTGAAAATTTCCTGCGAATTGAGAGGCGTGCCCTTGTGCTTTATAAGCATTCCTGTGTATGCAGTCATGTCAGATACCATTAGTATGTTAAATAGTTGCTGTGTATTTTATACACTTGTTGTTTTGGTGTATATTATAATGAGTTTAATGTCAATGTCGTGACAGTCTATACATGTTGGGTTGTGATTAGATGATTTTGTAAAACTTTTTGCACTGGGTTGTGATTAGATGATTCTGTAAAACTTTTTGCACTGGGTTGTGATTAGATGATTCTGTAAAACTTTTTACACTATTAATGCATGCATAACCCTTTTTCTCTTGTAGTATTATAAA

Coding sequences of Glyma13g20220

Limit To All Plant Sequences

>Glyma13g20220.1   sequence type=CDS   gene model=Glyma13g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAATACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCCTCCCGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTTATGGACGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGA

>Glyma13g20220.2   sequence type=CDS   gene model=Glyma13g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAATACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATCAACGCGGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTGGCTGTGAAAAAGGTAAAAGGGCTTTCGTCACAAGAGTTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGATAGAATCCAAGCAATCCCAGATGGGGCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCCTCCCGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAGTCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGACCAAGGATTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAATATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTTATGGACGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACTGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGA

Predicted protein sequences of Glyma13g20220

Limit To All Plant Sequences

>Glyma13g20220.1   sequence type=predicted peptide   gene model=Glyma13g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVIDILTRVDSICKKYDKYDVEKHRDANVSGDDAFARLYASVDADIVALLQKAESASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSSQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK*

>Glyma13g20220.2   sequence type=predicted peptide   gene model=Glyma13g20220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVIDILTRVDSICKKYDKYDVEKHRDANVSGDDAFARLYASVDADIVALLQKAESASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSSQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK*

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