Glyma13g20204 - SoyBase

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Report for Sequence Feature Glyma13g20204

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23630817
stop:	23638598
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20204

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37150	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr2:15603748-15605988 REVERSE LENGTH=546	SoyBase	E_val: 2.00E-113	ISS
GO:0010260	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ senescence	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14155	Panther	RING FINGER PROTEIN 6/12/38	JGI		ISS
PTHR14155:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_I1LZ33	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ33_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q40221	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein containing C-terminal RING-finger n=1 Tax=Lotus japonicus RepID=Q40221_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g20204

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g20204 not represented in the dataset	Glyma13g20204 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20204

Paralog	Evidence	Comments
Glyma10g05845	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20204 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g138700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20204

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20204

Limit To All Plant Sequences

>Glyma13g20204.1   sequence type=CDS   gene model=Glyma13g20204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGCATAGACATTTATATAGCTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCTTGGTAGGAGTAGCACTTCAGACAATGGTTCTTTTATTTATCCTTCGGAAAATATGTCCATAGATAACATTTCTTTTCCATCTCATTGGAACACTGCACCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCGCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTTTGCCTTCACCAAGTGCTGGAATGTTTTATGCGATGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGCTGCTGATGGGGTTTTTAATGATCTTACAATGGGAAATGGACGAGGGCCTCAAAAGCGAAAGAGCCCTGGAATTCCTCCTGTCTGTGAAAGAGGCAGTACAAGCAGATATTTCAATGCTGCAAGTGCAGCTGATCGTCCTACATCTTCAGAATTGTGGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTTAATATGACACCCACATTTAGAGGTAGAGGCCTTTCTATACGGGGCGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGGCCCATTTATCAAATACTCATCCACACAACTCATACTCTACTGGTCTACCAGTTGACCATTCTTCTAGCGTGGTCGATCTGTCAACTCAAACTTCTGGCACTTTGACACGGGATTGGAGCCCAATGAGTTCATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTAATGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGCAGAAATCCTACTGCTCCTCAAAGTTTTCGTAATAATCTGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCATTTGGGACGTGTGATACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGACCACTGTTGGCTGGCAGAGCAATGATAGACATGGAAGGTCAAGAATACCTAGTGATAGATATCGATCATTGGCTGATGAGGTTGGTCTCAATGAACGATTTAACTCTGAGGGTTTCATGATTGTTGATCGCACTTCACTGAATGGATCTAGGAATATGCTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATAAGAAAGTGGTTGTCTATGAAGAAAGTTTGTCCTATCTGCAAAGTTTCTGCGTTGTCAGAGGCTAACAAGGACAAATAA

Predicted protein sequences of Glyma13g20204

Limit To All Plant Sequences

>Glyma13g20204.1   sequence type=predicted peptide   gene model=Glyma13g20204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGHRHLYSSSPMFEGEPDQNWNHMHMDQQYVNLGRSSTSDNGSFIYPSENMSIDNISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLPSPSAGMFYAMPENYVHQPSNSNYDRQAFSAADGVFNDLTMGNGRGPQKRKSPGIPPVCERGSTSRYFNAASAADRPTSSELWPEKPNMDSLYMPWDHVNMTPTFRGRGLSIRGEGPLRNVRSRSALDLESNLARAHLSNTHPHNSYSTGLPVDHSSSVVDLSTQTSGTLTRDWSPMSSCPPHGRVSSSDANAFNHEASHFLNGSGSSNAPVDVGGFHNEFGTSRNPTAPQSFRNNLTQTARGVRSNYSQRSTPTFRASSSLHLGRVIPSDDGLHMVAESYSSRHPRPLTTVGWQSNDRHGRSRIPSDRYRSLADEVGLNERFNSEGFMIVDRTSLNGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEETCAICLEEYKNMDDVGTLKACGHDYHVGCIRKWLSMKKVCPICKVSALSEANKDK*

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