SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45490 | AT | Annotation by Michelle Graham. TAIR10: ataurora3 | chr2:18747658-18749044 REVERSE LENGTH=288 | SoyBase | E_val: 1.00E-170 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0043987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-S10 phosphorylation | SoyBase | N/A | ISS |
| GO:0043988 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-S28 phosphorylation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0000775 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0035175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone kinase activity (H3-S10 specific) | SoyBase | N/A | ISS |
| GO:0044022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone kinase activity (H3-S28 specific) | SoyBase | N/A | ISS |
| KOG0580 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24350 | Panther | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_I1LZ26 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LZ26_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O64629 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase Aurora-3 n=1 Tax=Arabidopsis thaliana RepID=AUR3_ARATH | SoyBase | E_val: 5.00E-168 | ISS |
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Glyma13g20180 not represented in the dataset |
Glyma13g20180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g138400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g20180.1 sequence type=CDS gene model=Glyma13g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACGACGTCGTTTTAAGAAAAATAAAAAAATAAGTGTGCTTTACCCAAATTCAAATTCTGAGAAAAACTCCAACGAACTTCGCATTTCCACGAAAATGGCTTCCCAAAACCCAGCGGAGGAAGAAAATTCAAAGCGACATTGGTCCCTTGAAGACTTCGAGATCGGAAAACCTCTCGGTAGGGGCAAATTCGGTAGAGTTTACGTCGCCAGAGAAGTTAAGAGCAAATTTGTTGTGGCGTTGAAGGTTATATTTAAGGAACAAATTGATAAGTACAGAGTTCATCACCAACTGAGGAGAGAGATGGAGATACAGACCAGTCTCCGGCACGCAAACATCCTGCGTCTTTACGGTTGGTTTCATGATGCTGACCGTGTTTTCTTGATTCTTGAGTATGCTCATAAGGGAGAGCTTTACAAGGAGCTGAGAAAAAAGGGTCATCTCACTGAGAAGCAAGCTGCCACGTATATTTTGAGCCTCACAAAGGCGTTGGCATATTGTCATGAGAAACATGTTATTCATAGGGATATCAAGCCAGAAAATTTGTTGCTTGACCATGAGGGGCGTCTTAAAATTGCAGACTTTGGTTGGTCTGTTCAGTCTAGAAGCAAAAGACATACCATGTGTGGAACATTGGATTATTTAGCACCAGAAATGGTTGAAAACAAAGCTCATGACTATGCAGTTGACAACTGGACTTTGGGTATCCTTTGTTATGAGTTCCTCTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAATCTGATACCTTCAAAAGGATAATGAAGGTTGATCTAAGCTTCCCTTCCACCCCTTCTGTCTCTATAGAGGCGAAAAATCTGATTAGTCGGCTCCTGGTGAAAGACTCCTCACGAAGGCTCTCTCTTCAGAAGATAATGGAGCATCCTTGGATAATCAAGAATGCAGATTTTGTGGGTATTTGCTAG
>Glyma13g20180.1 sequence type=predicted peptide gene model=Glyma13g20180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRRRFKKNKKISVLYPNSNSEKNSNELRISTKMASQNPAEEENSKRHWSLEDFEIGKPLGRGKFGRVYVAREVKSKFVVALKVIFKEQIDKYRVHHQLRREMEIQTSLRHANILRLYGWFHDADRVFLILEYAHKGELYKELRKKGHLTEKQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAESQSDTFKRIMKVDLSFPSTPSVSIEAKNLISRLLVKDSSRRLSLQKIMEHPWIIKNADFVGIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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