Glyma13g20090 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g20090

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23552026
stop:	23557928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03070	AT	Annotation by Michelle Graham. TAIR10: importin alpha isoform 9 \| chr5:718468-721395 REVERSE LENGTH=519	SoyBase	E_val: 0	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0048522	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG0166	KOG	Karyopherin (importin) alpha	JGI		ISS
PTHR23316	Panther	IMPORTIN ALPHA-RELATED	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
UniRef100_I1LZ19	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Importin subunit alpha n=1 Tax=Glycine max RepID=I1LZ19_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AC53	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AC53 related cluster n=1 Tax=unknown RepID=UPI000233AC53	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g20090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20090

Paralog	Evidence	Comments
Glyma10g05740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g137700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g20090

Limit To All Plant Sequences

>Glyma13g20090.1   sequence type=CDS   gene model=Glyma13g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATTCTGGCTTCACTAGTAACAGGAGGGATCCCATTAAGTCCTCAGTTGGGAATGCCGCGGCTAGTAGGAGACGACAGCATGCAGTCACAGTGGGGAAAGAAAGGAGGGAATCGCTGATGCGCGCGAAAAGATTCTGTAGGGTGGGCATTGATGGCGGCGATGGCGGTGATGGCGAAGTTTCCGTTGACAGTGACATGTTAATTGAAGAAGAGCAATCCATTTTGGAGTCTCAGACTTCAGCGGCAGTGGAAAATTTGAAATCTGCCATTGCTTTTCAAGGGAAGGGTGCAGTGAAGAAAAGAGTGGGGGCTCTTCAAGAGTTAAGGCGTTTGCTGTCAAGATCTGAATTTCCTCCTGTTGAGTCTGCTATTAATGCTGGAGCTGTACCCTTGCTTGTGCAGTGTCTTTCATTTGGTTCTCCAGATGAACAGTTGCTTGAGGCAGCTTGGTGTCTCACAAATATTGCTGCAGGGAATCCAGAAGAAACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATGTGGCTGGTGAAGGTGAAGAGTTGAGGAATGTTCTGCTAGTTCAAGGGGCATTACTACCTCTTGCAAGAATGATGCTACCAAACAGAGGTTCAACTGTTAGAACAGCTGCCTGGGCTTTGTCAAACCTAATCAAGGGCCCAGATCCTAAAGCTGCTACAGAACTCGTTCGTATTGATGGAGTATTGGATGCAATCATTCGACAGTTGAAGAAAGCGGATGATGAATTAGCAACTGAAGTAGCATGGGTGGTTGTTTATCTATCAGCACTTTCAAATATAGCTACCAGCATGCTGGTGAAGAGCAATGTACTCGAATTGCTTGTACATAAATTAGCTACATCAAACAGTTTGCAATTAATGATTCCGGTTTTGCGGAGTTTAGGTAATCTCATTGCCAGTGATTCACATGCAATTCCTGGACTTGGCATTACAGATAATGTGATACAAGTTCTGGTAAAATGTCTGAATTGTGAAAACAGGGTCTTAAAGAAGGAAGCATCCTGGGTGCTGTCTAATATAGCTGCTGGTTCTGTTGAGCACAAGCAGTTGATATATTCTAGTGAGGCAGTGCCTGTGCTATTGCGCCTTTTTTCTGCTGCTCCATTTGATATAAGAAAGGAAGTGGCTTATGTATTGGGCAACCTTTGTGTTTCCCCAACTAAAGGTGATGACAAGCCAAGTCTGATCCTGGAGCACCTGGTTTCACTTGTTGAAAAAGGATGCTTGCCAGGTTTTATTGATTTAGTTAGATCAGCTGACATCGAAGCTGCAAGGCTAGGACTTCAGTTCATAGAGCTTGTTCTGAGGGGGATGCCAAATGGTAAGGGTCCAAAGCTTGTAGAACAAGAAGATGGGATTGAAGCCATGGAAAGATTTCAGTTTCATGAAAATGAAGATCTGAGAACTATGGCAAATACTCTAGTTGACAAGTATTTTGGAGAGGACTATGGGCTTGATGAATAG

Predicted protein sequences of Glyma13g20090

Limit To All Plant Sequences

>Glyma13g20090.1   sequence type=predicted peptide   gene model=Glyma13g20090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSGFTSNRRDPIKSSVGNAAASRRRQHAVTVGKERRESLMRAKRFCRVGIDGGDGGDGEVSVDSDMLIEEEQSILESQTSAAVENLKSAIAFQGKGAVKKRVGALQELRRLLSRSEFPPVESAINAGAVPLLVQCLSFGSPDEQLLEAAWCLTNIAAGNPEETKALLPALPLLIAHLGEKSYPPVAEQCAWALGNVAGEGEELRNVLLVQGALLPLARMMLPNRGSTVRTAAWALSNLIKGPDPKAATELVRIDGVLDAIIRQLKKADDELATEVAWVVVYLSALSNIATSMLVKSNVLELLVHKLATSNSLQLMIPVLRSLGNLIASDSHAIPGLGITDNVIQVLVKCLNCENRVLKKEASWVLSNIAAGSVEHKQLIYSSEAVPVLLRLFSAAPFDIRKEVAYVLGNLCVSPTKGDDKPSLILEHLVSLVEKGCLPGFIDLVRSADIEAARLGLQFIELVLRGMPNGKGPKLVEQEDGIEAMERFQFHENEDLRTMANTLVDKYFGEDYGLDE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain