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Report for Sequence Feature Glyma13g20060

Feature Type:gene_model
Chromosome:Gm13
Start:23534349
stop:23537848
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g20060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35795AT Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr2:15042321-15043334 FORWARD LENGTH=112 SoyBaseE_val: 1.00E-60ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
KOG0723 KOG Molecular chaperone (DnaJ superfamily) JGI ISS
PTHR12763Panther UNCHARACTERIZED JGI ISS
PTHR12763:SF4Panther UNCHARACTERIZED JGI ISS
PF00226PFAM DnaJ domain JGI ISS
UniRef100_B6TQ49UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial import inner membrane translocase subunit TIM14 n=1 Tax=Zea mays RepID=B6TQ49_MAIZE SoyBaseE_val: 2.00E-59ISS
UniRef100_C6T2E9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2E9_SOYBN SoyBaseE_val: 7.00E-74ISS

Expression Patterns of Glyma13g20060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20060
ParalogEvidenceComments
Glyma10g05710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g137400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g20060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g20060
>Glyma13g20060.1   sequence type=CDS   gene model=Glyma13g20060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACACCATTGGTGGCAGGGATTGCAGTGGCGGCTGCGGCTTATGCTGGTAGATATGGTATCCAGGCTTGGCAAGCATTCAAAGCTAGACCACCGAGTATGCGTAAATTTTATGAAGGTGGTTTCCAGGCTACCATGACTAGAAGGGAAGCAGCTCTTATACTGGGTGTTAGAGAACGCACTCCAACAGATAAGATTAAAGAAGCACATAGGAGGGTGATGGTTGCAAACCATCCAGATGCAGGTGGCAGCCATTACCTTGCATCCAAAATTAATGAAGCAAAAGATATGTTACTTGGAAAGACCAAAGGTGGTGGGTCAGCATTTTGA
Predicted protein sequences of Glyma13g20060
>Glyma13g20060.1   sequence type=predicted peptide   gene model=Glyma13g20060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPLVAGIAVAAAAYAGRYGIQAWQAFKARPPSMRKFYEGGFQATMTRREAALILGVRERTPTDKIKEAHRRVMVANHPDAGGSHYLASKINEAKDMLLGKTKGGGSAF*






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