Glyma13g20010 - SoyBase

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Report for Sequence Feature Glyma13g20010

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23485785
stop:	23487654
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g20010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02960	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142	SoyBase	E_val: 6.00E-93	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1749	KOG	40S ribosomal protein S23	JGI		ISS
PTHR11652	Panther	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	JGI		ISS
PTHR11652:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF00164	PFAM	Ribosomal protein S12	JGI		ISS
UniRef100_I1LZ09	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZ09_SOYBN	SoyBase	E_val: 1.00E-97	ISS
UniRef100_Q9M5Z9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S23 n=1 Tax=Euphorbia esula RepID=RS23_EUPES	SoyBase	E_val: 2.00E-96	ISS

Expression Patterns of Glyma13g20010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g20010

Paralog	Evidence	Comments
Glyma10g05660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g20010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g137100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g20010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g20010

Limit To All Plant Sequences

>Glyma13g20010.2   sequence type=transcript   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTACATTGGCCCAGTAGCGCTGAACAGACCCAGTAGTGTTTTGGTTTTTGTCCACTATATAAACCCCCAACTTCGGTTATCGATTAGGGTTTTGCGCTGTTGTTGCTGCTCATCCTCCGTAACCTCCGAGCTCTGCACCGAAGAACGAAGCCATGGGGTAACCTAACAATTCTCCATTACTCTTTCGATATGCTTCACTGCATGTTTATGTTCCTTTTATGTTTTATTTGCTTTGTTCCCAAAAATTGAACGCACACGAAGGAACTTGAGCTCGTGAATTTATATATGCTTCTGGTAGATCTGTTTCTCATCAAATAATCTCATCGATTCTTCCCGTGTGAAAACTTTATATTTTCTACAATGGGATTATGTATATTTATCGGTGTAGTGTTTATGTTGGTTTTCCCCCCGTTTTGTGCAATGTGATTTGCTTCTTCAATGGTTTTTGTTTAATTTTATTTGGTCGATGATCTAAAGCTTCCTTGTAAATATCGATTATTTCATTGATTTGTTATTTGATGTTAGTTATAGGGTCAATGGAATTGAGTTCCTTTGTCTTGTTTTTGAGGGGTGTGGGAGAAGGGGCAAATTGCTTGTGACAATTTCAAAAAAATGAAAATAAAATGGAGTGAACATTTAACTAGGTTTTTTAGTGATGTCCTTCTAGACTTGGTATGGTCAATGAATGGAAGAACATTTAATTAGGTTTTATAGTTATCTGGTCTAATTCAATTGGGGGAACTAGGAATTGGTTGATGAATAAAAGAACATAGAATGCATGAAATTAGAATTTGTTGCTGTCTTACAGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAATTTGTGGAGTACTTGTGTTTGTTTTCAATAGTTTCTCTCAAGTATTATGAATTTTGTTTTTAGGTGAACGGGTTTTATGAACAATTTTCTATCTTTTCTAGTTATTTTACTGAACTTCATTTAACATTTCAAGTAACATATCTCGGCTTGCCTCGCCTATGCTTCTTCCCCTTTCTCTGGCTTCTTGCGATTGTTTTTTTCATTCTCTTGCTGTAAACTTTCACGGAATATATAGCCATTGAAGGTTTAGCAATTGCTTCTGTTAATGAATCGATCAACCGGGAGATGGTAGCAGTAGGAGCTAGCTGTTAGATATCTGATCCTATTTTCAATTCTCTAGTTATTCTCTAGATATGTGATCCTATTATACTCGTGCAAGTTGTGAAAAAATAGGATGATTTTTTTTT

>Glyma13g20010.3   sequence type=transcript   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTACATTGGCCCAGTAGCGCTGAACAGACCCAGTAGTGTTTTGGTTTTTGTCCACTATATAAACCCCCAACTTCGGTTATCGATTAGGGTTTTGCGCTGTTGTTGCTGCTCATCCTCCGTAACCTCCGAGCTCTGCACCGAAGAACGAAGCCATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGTGAGTGCTTGTCCATGTTTGCTAGCTTCATTATTTTTTATACTCCTGGAAATAACTTGAGTTTCTTTGATAAATTGTTATTTGTATCCATTGTGTAACTTGGGGTGTGGCCCATGGTTGTTTAGGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAATTTGTGGAGTACTTGTGTTTGTTTTCAATAGTTTCTCTCAAGTATTATGAATTTTGTTTTTAGGTGAACGGGTTTTATGAACAATTTTCTATCTTTTCTAGTTATTTTACTGAACTTCATTTAACATTTCAAGTAACATATCTCGGCTTGCCTCGCCTATGCTTCTTCCCCTTTCTCTGGCTTCTTGCGATTGTTTTTTTCATTCTCTTGCTGTAAACTTTCACGGAATATATAGCCATTGAAGGTTTAGCAATTGCTTCTGTTAATGAATCGATCAACCGGGAGATGGTAGCAGTAGGAGCTAGCTGTTAGATATCTGATCCTATTTTCAATTCTCTAGTTATTCTCTAGATATGTGATCCTATTATACTCGTGCAAGTTGTGAAAAAATAGGATGATTTTTTTTT

Coding sequences of Glyma13g20010

Limit To All Plant Sequences

>Glyma13g20010.1   sequence type=CDS   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA

>Glyma13g20010.2   sequence type=CDS   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGACGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTGGGAGATATTCCTGGTGTCAGGTTTAAGGTCGTGAAGGTCTCTGGTGTCTCTCTTTTGGCTCTCTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA

>Glyma13g20010.3   sequence type=CDS   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGACACATGGAATGGGATCTGCTCGCAAGCTCAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAATCACATCTTGGAAATGAATGGAAGAAACCTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCCGCTTTTGTCCCTAATGACGGTTGCTTGAACTACATTGAAGAGAATGTGAGTGCTTGTCCATGTTTGCTAGCTTCATTATTTTTTATACTCCTGGAAATAACTTGA

Predicted protein sequences of Glyma13g20010

Limit To All Plant Sequences

>Glyma13g20010.1   sequence type=predicted peptide   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTHGMGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*

>Glyma13g20010.2   sequence type=predicted peptide   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*

>Glyma13g20010.3   sequence type=predicted peptide   gene model=Glyma13g20010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTHGMGSARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENVSACPCLLASLFFILLEIT*

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