Report for Sequence Feature Glyma13g19910
Feature Type: gene_model
Chromosome: Gm13
Start: 23403984
stop: 23410910
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma13g19910
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09600 AT
Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr3:2946459-2948270 FORWARD LENGTH=298
SoyBase E_val: 7.00E-136 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0007623 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian rhythm
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009739 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus
SoyBase N/A ISS
GO:0009751 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0032922 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian regulation of gene expression
SoyBase N/A ISS
GO:0043966 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3 acetylation
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0048574 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0724
KOG
Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
JGI ISS
PTHR12802 Panther
SWI/SNF COMPLEX-RELATED
JGI ISS
PTHR12802:SF30 Panther
OS06G0105800 PROTEIN
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_I1LZ00 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LZ00_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q0PJJ0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB118 n=1 Tax=Glycine max RepID=Q0PJJ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma13g19910
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma13g19910
Paralog Evidence Comments
Glyma10g05560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma13g19910 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g136300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma13g19910
Transcripts of Glyma13g19910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g19910.2 sequence type=transcript gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTGATGTATAGATTAAACGGAAAGAAACTGTTTTGTTATGCTCTTCTTAGGTTTATGTTTTTAAGAAAACAAAAACATGTGGGTATTTTTTACTAACCATAGAAAATTAGAAGATGAGCCTAAGGTGTATGAAATAAGACGACAATATTTTGTTCCGATGGGACCGGACAAGGGACGATGAAATCAGTGTAGTGGAAGAAGTTGTGTTTTTGTTGGGACAATTGGTGGCTCTCAAATTGTGAACCGCACATATACCCACCCTGCTTCCCACGCCACATCGATCTCACGTTCTCTCTCTTTCTTTTTTCTTGTTGAAACTGTGAGTCTATGTTATTTGTGGCGGAGCATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAATGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTTGATAGAATGGGGAGACACCCCAATACTACTGGGCAAGGCGCCAATGACCCACCCAAAAGATTACTGCACAAGCTTAAACCACAAGTAATTTGACAACTACTCAATTAGTCCCTAGACGTCAAGGGATCTCTCTGAGAAGGCCCCAGAGTGTTCTCTTTTTCTAATTACATGTGAATGACGTGATAGGATTTCCATGTAATAAATATAGGCTCTTGTATTAATTTGTGATTAGCCCCGGATTACTTGAAAAATTAAAGTATTTATTAGATTAGTAAGTGTATATAAATTTTAATATAAACTCTCATTAAAGCATTCATCAAAGTATACAAAATAAAATTATGTTTTTATAAAAAAAAATACAAACA
>Glyma13g19910.3 sequence type=transcript gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTGATGTATAGATTAAACGGAAAGAAACTGTTTTGTTATGCTCTTCTTAGGTTTATGTTTTTAAGAAAACAAAAACATGTGGGTATTTTTTACTAACCATAGAAAATTAGAAGATGAGCCTAAGGTGTATGAAATAAGACGACAATATTTTGTTCCGATGGGACCGGACAAGGGACGATGAAATCAGTGTAGTGGAAGAAGTTGTGTTTTTGTTGGGACAATTGGTGGCTCTCAAATTGTGAACCGCACATATACCCACCCTGCTTCCCACGCCACATCGATCTCACGTTCTCTCTCTTTCTTTTTTCTTGTTGAAACTGTGAGTCTATGTTATTTGTGGCGGAGCATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAATGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTAAGGTATTGTCAACATATGATGTCAATCCCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAACCACTAGCAATTTGTTGATATGGTAGGGCAAATTTGGAGTGAAGACTGAGGTTTTTCTCGGCCAGCAGTAGGGCATGGGAATATCTTGCACCCACTGTAAAGCCTGTAAATGTAACCGTAGTCCTTTGTAACCACAGCCAAAATAGTTTATGTTAGAAAGCTGAAGAGCACAATGTATTTTTCAGCTGATTCTTATTACAATTGTTGTATTGCAGTGATTTTGTTGCCTTCTAGTAGAGACATAGGTTTGTAAGATATTTTTAATGATACAAATGTATCATCACAAAATTAGAAAAAGGGGAGGGAGTAACTATTGTCTAGTGACTAATATCGACGTGGCCTTTCGTTTTCACCAAAAAAAGAAACGTGGCCTTTTGTTGCCGAATTTGTGTGTGTAAAGTCACACTTTGACATACTACATTTTTTTGTGCTTCAGCCTTGTGAGTCCTGGTTTGCCAGTTGAATGGCTTTCTTCGTTAGATTTGTAAGATATTTTCAATGTAAAGTGTCCCAATGTCTAAATAATATTTATTTACTGAATCAAATCCAAACAGAATTGAACGAATTT
Coding sequences of Glyma13g19910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma13g19910.1 sequence type=CDS gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAATGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTAAGAAGGTATTGTCAACATATGATGTCAATCCCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA
>Glyma13g19910.2 sequence type=CDS gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAATGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTTGA
>Glyma13g19910.3 sequence type=CDS gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACTCCTCCACCAACACCTCGAATTCTCAGTCAATGGCTGCAGCAGCCAGTGATGGGTCTGGGAAGAAGGTAAGAAAACCTTACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCTGTTGGTTATGCTTCATCAAGAAATACGCTTGCACCTGGGTTTGCCTCATGGGATGAAACTTCCCTGCTGATGAATGCCGGAGCTGATAAACCCATGACCTGTCAGGATGAACTCAACAATGTTCATCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTATTTGATCCAGAAACAAATGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTCGAACCCATTAAGGTATTGTCAACATATGATGTCAATCCCATGGCAGTAGGAATTGATGTCAAGAAGCAGACAAATGATCTATCATGTCAAACCGCTTAA
Predicted protein sequences of Glyma13g19910
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma13g19910.1 sequence type=predicted peptide gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSSTNTSNSQSMAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASVGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNVHHGNEADIGSKGITQITNSSLSGVGNSTRTLLTSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKVLSTYDVNPMAVGIDVKKQTNDLSCQTA*
>Glyma13g19910.2 sequence type=predicted peptide gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSSTNTSNSQSMAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASVGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNVHHGNEADIGSKGITQITNSSLSGVGNSTRTLLTSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPI*
>Glyma13g19910.3 sequence type=predicted peptide gene model=Glyma13g19910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNSSTNTSNSQSMAAAASDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASVGYASSRNTLAPGFASWDETSLLMNAGADKPMTCQDELNNVHHGNEADIGSKGITQITNSSLSGVGNSTRTLLTSEIPKQGKQAPVLHGLPDFAEVYGFIGSVFDPETNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKVLSTYDVNPMAVGIDVKKQTNDLSCQTA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
