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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02790 | AT | Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein | chr5:632877-634858 FORWARD LENGTH=235 | SoyBase | E_val: 1.00E-113 | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| KOG0406 | KOG | Glutathione S-transferase | JGI | ISS | |
| PTHR11260 | Panther | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | JGI | ISS | |
| PTHR11260:SF42 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00043 | PFAM | Glutathione S-transferase, C-terminal domain | JGI | ISS | |
| UniRef100_Q9FQ95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: In2-1 protein n=1 Tax=Glycine max RepID=Q9FQ95_SOYBN | SoyBase | E_val: 7.00E-172 | ISS |
| UniRef100_Q9FQ95 | UniRef | Annotation by Michelle Graham. Best UniRef hit: In2-1 protein n=1 Tax=Glycine max RepID=Q9FQ95_SOYBN | SoyBase | E_val: 7.00E-172 | ISS |
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Glyma13g19830 not represented in the dataset |
Glyma13g19830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g05480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g135500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19830.3 sequence type=transcript gene model=Glyma13g19830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAATACCATGAACCAATTATTTCCAGAAAATTTTCTGAAATGGAAAGTTATGTCATGGCTGACGATGGGACATGGCCTATAAAAGGGCCAAACTTGCTTGAGCTTAGACCATTCTGATTCTGTCCATCCAAATCTTAAAAATATTCAGTGAAGATCAACCTCAATGGCATCTCTTGGCGTGCGACCAGTTCTTCCCCCTCCATTAACTTCCATCTCCGACCCACCTCCTCTTTTCGATGGCACCACCAGGTTGTACATCAGTTATTCTTGCCCCTATGCACAACGTGTGTGGATCGCTAGGAACTACAAGGGGCTACAAGATAAGATCAATTTGGTCCCTATTAACCTTCAAGACAGGCCAGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTGCCATCCTTGGAGCACAATGGCAAGGTGTTGGGAGAAAGTCTTGATTTGATCAAATATGTAGATGCAAACTTTGAAGGGACACCTTTGTTTCCCAGTGATCCTGCCAAGAAAGAGTTCGGTGAGCAATTGATATCCCATGTTGATACATTCAGCAAAGACCTGTTCGTTTCATTGAAAGGGGATGCTGTACAGCAAGCCAGTCCCGCTTTTGAATACTTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTGCTTGGCCAATTCAGTTTGGTGGATATTGCTTATATTCCATTTGTTGAAAGATTCCAAATTGTCTTTGCTGAGGTGTTCAAACATGACATCACAGAAGGAAGGCCTAAACTTGCAACATGGTTTGAGGTACACTAACATCAGTTGTGTTAAAATTTCTTTGGAAATTGCACTTAATTTATATGATGATGATATTCATCATAATCATCAATCTGAACATTAAGCAAATTTCTCCATTTGCTTCAAAAGTTCTAACAGGTTGTTCCATTTGAACTTGGCCCTCAATCTCATGCCTTTGATAGGAACCCTAACTACTAACCCTTCAGACATACTGATTACAAAGAAGAGATCTTCATTTGTGAATGAAAATGTTTGTTTTACAGGAGTTGAATAAGCTAAATGCTTATACCGAGACTAGAGTCGATCCTCAGGAGATCGTTGATCTTTTCAAGAAACGCTTCCTGCCTCAACAGTGAACGTTGTATTGCTGCAGGCTTCCTCTAAAATGTAGACTCTGCCCATATAGCGTCCTTTCATTCACGGGATGGGATGCATCTGCAGTCAAATGTCGGTTGTGTTTATCTGCCAGAGTTGCAGGATAGTTTGAAGTCATAATCACGTTCATTTTTCAGCTTGTTTGTTTGATGTCATAATAATGTTTATGTACCAGTTTGTGATCACTGATCAATATGATATAATGACCAATATGGTATTATTATCCTATTTGAACTATGTTATATCACGTACTAAGCTATGATATCTCAAGTGTCCGTGACCTGTCAGCAAAGGTTTATTGCATGAAAATTATGCATGGTTAACAATATATCACCTCGCAAATTTTAATATTAGTTAA
>Glyma13g19830.1 sequence type=CDS gene model=Glyma13g19830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCTCTTGGCGTGCGACCAGTTCTTCCCCCTCCATTAACTTCCATCTCCGACCCACCTCCTCTTTTCGATGGCACCACCAGGTTGTACATCAGTTATTCTTGCCCCTATGCACAACGTGTGTGGATCGCTAGGAACTACAAGGGGCTACAAGATAAGATCAATTTGGTCCCTATTAACCTTCAAGACAGGCCAGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTGCCATCCTTGGAGCACAATGGCAAGGTGTTGGGAGAAAGTCTTGATTTGATCAAATATGTAGATGCAAACTTTGAAGGGACACCTTTGTTTCCCAGTGATCCTGCCAAGAAAGAGTTCGGTGAGCAATTGATATCCCATGTTGATACATTCAGCAAAGACCTGTTCGTTTCATTGAAAGGGGATGCTGTACAGCAAGCCAGTCCCGCTTTTGAATACTTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTGCTTGGCCAATTCAGTTTGGTGGATATTGCTTATATTCCATTTGTTGAAAGATTCCAAATTGTCTTTGCTGAGGTGTTCAAACATGACATCACAGAAGGAAGGCCTAAACTTGCAACATGGTTTGAGGAGTTGAATAAGCTAAATGCTTATACCGAGACTAGAGTCGATCCTCAGGAGATCGTTGATCTTTTCAAGAAACGCTTCCTGCCTCAACAGTGA >Glyma13g19830.3 sequence type=CDS gene model=Glyma13g19830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCTCTTGGCGTGCGACCAGTTCTTCCCCCTCCATTAACTTCCATCTCCGACCCACCTCCTCTTTTCGATGGCACCACCAGGTTGTACATCAGTTATTCTTGCCCCTATGCACAACGTGTGTGGATCGCTAGGAACTACAAGGGGCTACAAGATAAGATCAATTTGGTCCCTATTAACCTTCAAGACAGGCCAGCTTGGTATAAGGAGAAAGTCTACCCTGAAAATAAGGTGCCATCCTTGGAGCACAATGGCAAGGTGTTGGGAGAAAGTCTTGATTTGATCAAATATGTAGATGCAAACTTTGAAGGGACACCTTTGTTTCCCAGTGATCCTGCCAAGAAAGAGTTCGGTGAGCAATTGATATCCCATGTTGATACATTCAGCAAAGACCTGTTCGTTTCATTGAAAGGGGATGCTGTACAGCAAGCCAGTCCCGCTTTTGAATACTTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCATTCTTGCTTGGCCAATTCAGTTTGGTGGATATTGCTTATATTCCATTTGTTGAAAGATTCCAAATTGTCTTTGCTGAGGTGTTCAAACATGACATCACAGAAGGAAGGCCTAAACTTGCAACATGGTTTGAGGTACACTAA
>Glyma13g19830.1 sequence type=predicted peptide gene model=Glyma13g19830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLGVRPVLPPPLTSISDPPPLFDGTTRLYISYSCPYAQRVWIARNYKGLQDKINLVPINLQDRPAWYKEKVYPENKVPSLEHNGKVLGESLDLIKYVDANFEGTPLFPSDPAKKEFGEQLISHVDTFSKDLFVSLKGDAVQQASPAFEYLENALGKFDDGPFLLGQFSLVDIAYIPFVERFQIVFAEVFKHDITEGRPKLATWFEELNKLNAYTETRVDPQEIVDLFKKRFLPQQ* >Glyma13g19830.3 sequence type=predicted peptide gene model=Glyma13g19830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLGVRPVLPPPLTSISDPPPLFDGTTRLYISYSCPYAQRVWIARNYKGLQDKINLVPINLQDRPAWYKEKVYPENKVPSLEHNGKVLGESLDLIKYVDANFEGTPLFPSDPAKKEFGEQLISHVDTFSKDLFVSLKGDAVQQASPAFEYLENALGKFDDGPFLLGQFSLVDIAYIPFVERFQIVFAEVFKHDITEGRPKLATWFEVH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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