Glyma13g19760 - SoyBase

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Report for Sequence Feature Glyma13g19760

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23240025
stop:	23244063
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02710	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). \| chr5:612628-613480 FORWARD LENGTH=176	SoyBase	E_val: 1.00E-64	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
PF03692	PFAM	Uncharacterised protein family (UPF0153)	JGI		ISS
UniRef100_B1WVU2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UPF0153-containing protein n=2 Tax=Cyanothece RepID=B1WVU2_CYAA5	SoyBase	E_val: 1.00E-27	ISS
UniRef100_I1LYX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYX9_SOYBN	SoyBase	E_val: 1.00E-117	ISS

Expression Patterns of Glyma13g19760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g19760 not represented in the dataset	Glyma13g19760 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g19760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g134800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g19760

Limit To All Plant Sequences

>Glyma13g19760.3   sequence type=transcript   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAACATGTTCCAAGAGTGACTCTCACACGCGTCCCCAATAAGCGCCTTATCATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAGATTTTGTGGGATTTGGATTCTTAATTGCTCAAGGTTGTTTTCTTGTCTTTACCTTGATTAATTATTATGCTGGTGGGAGTTTTCTTGCTTATAACTTCTGAAATATGATTTCTTGATCTAATGCAAGTGCTCAAAGTAGAACTAGAACCTAGCAACACTGGGAAAAAATAGCTATGGATTTGCGGGTTATTATTGTACGCTCTTTTTTGGAAATTATTGATTATTTATTGCCATATATCTTATTTTGGGATAACTGAAGGACCCTAATTAG

>Glyma13g19760.4   sequence type=transcript   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAACATGTTCCAAGAGTGACTCTCACACGCGTCCCCAATAAGCGCCTTATCATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAGATTTTGTGGGATTTGGATTCTTAATTGCTCAAGCTGGTTTTTCACTGCCTTACATATTGTCTGGGATGGGAGGAATTCTCCACACAATGCATGTGCTTATGCTTTTCAAGCACTGTGCTATGGATCTCTACTCTTATCGAAGCACAGCTACTATGTTAGTGTTTTTAGACTGGCACAAACAGAAACTTCCATTCAAAATTGAATATTACTTTCACATGTTCCTCCTAGATAACTATGTTCATGAAATGCTTGCTTTGATTATCATGGTCAAGCTCTCCCATGCCAGGTTTTTTGCTTCTCCTCTGGTCACACAGAAGCAGTAGCAGCTGGTTCACAATTCAAAGCATCATCTGCGGTTGTGATTGCTAAATTCTGTGCACTTGGAAATATGAGCTTAGATGGATGGTTAATAAAATAGACGTTTCAACTTATTTGAATGGGCTAATTTGATCATTCTATTGCTTATAGAATAGGCCCTACCCTAGGATCGATACATCATGGATGCTATATTTCTTTACCATGACAATTTTTTGATTTTTCTTTTTTTGGTACATGTTTATAAAACGTCTGTATTATCTATACTTACATGCATAGTACCTATTCAATGATCACCCACCTTTTTGCATGGAATATCTTGTGTCTCAGATTCAGTAATTTGCCAACCTAAAGAAAGAGCATTACGCA

>Glyma13g19760.5   sequence type=transcript   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAAACATGTTCCAAGAGTGACTCTCACACGCGTCCCCAATAAGCGCCTTATCATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAGATTTTGTGGGATTTGGATTCTTAATTGCTCAAGGTTTTTTGCTTCTCCTCTGGTCACACAGAAGCAGTAGCAGCTGGTTCACAATTCAAAGCATCATCTGCGGTTGTGATTGCTAAATTCTGTGCACTTGGAAATATGAGCTTAGATGGATGGTTAATAAAATAGACGTTTCAACTTATTTGAATGGGCTAATTTGATCATTCTATTGCTTATAGAATAGGCCCTACCCTAGGATCGATACATCATGGATGCTATATTTCTTTACCATGACAATTTTTTGATTTTTCTTTTTTTGGTACATGTTTATAAAACGTCTGTATTATCTATACTTACATGCATAGTACCTATTCAATGATCACCCACCTTTTTGCATGGAATATCTTGTGTCTCAGATTCAGTAATTTGCCAACCTAAAGAAAGAGCATTACGCA

Coding sequences of Glyma13g19760

Limit To All Plant Sequences

>Glyma13g19760.1   sequence type=CDS   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAG

>Glyma13g19760.3   sequence type=CDS   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAG

>Glyma13g19760.4   sequence type=CDS   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAG

>Glyma13g19760.5   sequence type=CDS   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCGCCCTCACCACTCTGTCACCGCCGTTATCTCTTTCCGTTACTTCGGCGGCGCGTCGTCCACGGCTGACAGCGATGGTGAAGACTGAGAAAAAGCAAAGCCTCGGCTTCGGCAGCGATAAGAAGGAAACAAAGTGGCACTGCGTGGAGGGTTGTGGTTCCTGCTGTAAGCTTCAAAAGGGTCCATCTTTTCCCTCTCCCGAAGAAATTTTCGACGACCCTTCTGACGTTCAGTTGTACAAAAGCTTGATAGGTCCTGATGGATGGTGTATTCATTATGAGAAGAGTACTCGGAAATGCTCCATTTACCCTGAGCGTCCATATTTTTGCCGTGTAGAGCCAGAGGTATTTAAATCTTTGTTTGGAGTTAAAGAGAAGAATTTTCACAAGGAGGCCTGCAGTTTCTGCAGGGACACAATTAAGTCTATTTATGGTCCCAATTCAAAGGAGCTTCATAATTTCAACAGCTCAATAAGGAACTCTTCTAGTTAG

Predicted protein sequences of Glyma13g19760

Limit To All Plant Sequences

>Glyma13g19760.1   sequence type=predicted peptide   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPALTTLSPPLSLSVTSAARRPRLTAMVKTEKKQSLGFGSDKKETKWHCVEGCGSCCKLQKGPSFPSPEEIFDDPSDVQLYKSLIGPDGWCIHYEKSTRKCSIYPERPYFCRVEPEVFKSLFGVKEKNFHKEACSFCRDTIKSIYGPNSKELHNFNSSIRNSSS*

>Glyma13g19760.3   sequence type=predicted peptide   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPALTTLSPPLSLSVTSAARRPRLTAMVKTEKKQSLGFGSDKKETKWHCVEGCGSCCKLQKGPSFPSPEEIFDDPSDVQLYKSLIGPDGWCIHYEKSTRKCSIYPERPYFCRVEPEVFKSLFGVKEKNFHKEACSFCRDTIKSIYGPNSKELHNFNSSIRNSSS*

>Glyma13g19760.4   sequence type=predicted peptide   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPALTTLSPPLSLSVTSAARRPRLTAMVKTEKKQSLGFGSDKKETKWHCVEGCGSCCKLQKGPSFPSPEEIFDDPSDVQLYKSLIGPDGWCIHYEKSTRKCSIYPERPYFCRVEPEVFKSLFGVKEKNFHKEACSFCRDTIKSIYGPNSKELHNFNSSIRNSSS*

>Glyma13g19760.5   sequence type=predicted peptide   gene model=Glyma13g19760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPALTTLSPPLSLSVTSAARRPRLTAMVKTEKKQSLGFGSDKKETKWHCVEGCGSCCKLQKGPSFPSPEEIFDDPSDVQLYKSLIGPDGWCIHYEKSTRKCSIYPERPYFCRVEPEVFKSLFGVKEKNFHKEACSFCRDTIKSIYGPNSKELHNFNSSIRNSSS*

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