Glyma13g19650 - SoyBase

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Report for Sequence Feature Glyma13g19650

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23126385
stop:	23128221
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02610	AT	Annotation by Michelle Graham. TAIR10: Ribosomal L29 family protein \| chr5:587611-588547 FORWARD LENGTH=123	SoyBase	E_val: 9.00E-67	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3436	KOG	60S ribosomal protein L35	JGI		ISS
PTHR13872	Panther	60S RIBOSOMAL PROTEIN L35	JGI		ISS
PTHR13872:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00831	PFAM	Ribosomal L29 protein	JGI		ISS
UniRef100_I1LYW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LYW9_SOYBN	SoyBase	E_val: 6.00E-76	ISS
UniRef100_Q9M5L0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L35 n=1 Tax=Euphorbia esula RepID=RL35_EUPES	SoyBase	E_val: 5.00E-69	ISS

Expression Patterns of Glyma13g19650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g19650 not represented in the dataset	Glyma13g19650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g19650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g133900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19650

Limit To All Plant Sequences

>Glyma13g19650.2   sequence type=CDS   gene model=Glyma13g19650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAGACAAAGACAAAGACATTTATTTTAACCAACATTCAAAACTGTTCCATTTTTTTTACCGAGGATAAGGTGTACGAGTTGAGGAATAAGACGAAGGCGGAGCTACTGAACCAGCTCAAGGATCTCAAGGCGGAGCTAGCCCTGCTCCGCGTCGCCAAGGTTACCGGCGGCGCCCCAAACAAGCTCTCCAAAATTAAGGTGGTGAGGCTATCGATAGCGCAGGTTTTGACGGTTATTTCCCAGAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCCCTTGACCTCCGTCCCAAGAAGACCCGCGCCATTCGCAGACGCCTTACCAAACACCAGGTGTCTTTGAAGACGGAACGTGAGAAGAAGAAGGAGCTGTACTTTCCACTAAGAAAGTATGCGATCAAAGTTTAG

Predicted protein sequences of Glyma13g19650

Limit To All Plant Sequences

>Glyma13g19650.2   sequence type=predicted peptide   gene model=Glyma13g19650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTKTKTFILTNIQNCSIFFTEDKVYELRNKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQVSLKTEREKKKELYFPLRKYAIKV*

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