SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53520 | AT | Annotation by Michelle Graham. TAIR10: UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=435 | SoyBase | E_val: 0 | ISS |
| GO:0009225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process | SoyBase | N/A | ISS |
| GO:0042732 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0048040 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1429 | KOG | dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF35 | Panther | gb def: udp-glucose 4-epimerase [bacillus halodurans] | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_G8XR16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase 1 n=1 Tax=Gossypium hirsutum RepID=G8XR16_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g19640 not represented in the dataset |
Glyma13g19640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g05260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g133800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19640.1 sequence type=CDS gene model=Glyma13g19640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACAGCTCCACAAGCAAACGAGTCTGAATCACCGGAGGGAGGAAGAGATGCTGGGGAGCAGCGAGACCTCACCATACTCCCCCAAATCCATCAAGCACACCAGATCCCTCCCCAGATCCATCAACTACCTCCTCCGCGAGCAGCGCCTCTTGTTCATCCTCGTCGGCATCCTCATCGGCTCCACCTTCTTCATCATCCAGCCCACTCTCTCCCGCTTGGGCCCACCCGAGCCGGTCCACACCTTCCTTCCCCGAACCGGGCTTGCCCGGTTCGCCGGCCCCGGGCCCCGCACGGGCCGCGTTCCTGTCGGGATCGGCGGGAGAAGGCAGAGGATCGTCGTCACCGGCGGCGCGGGCTTCGTCGGGAGCCACCTCGTCGACAAGCTCATCGCGCGCGGCGACGACGTCATTGTCATCGACAATTTCTTCACCGGAAGAAAAGAGAACCTGGTGCACCTGTTCGGGAACCCTAGGTTCGAGCTCATCCGACACGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCAAGACGAATGTGATGGGCACGCTTAACATGCTTGGCCTTGCGAAGCGAATTGGGGCTAGGTTTCTGCTTACTAGTACTAGTGAGGTTTACGGTGATCCGCTGGAGCATCCTCAGAAGGAGACTTACTGGGGAAATGTCAATCCAATTGGTGAGAGGAGCTGTTACGATGAAGGGAAGCGGACTGCGGAGACATTGGCCATGGATTATCATCGAGGAGCTGGTGTTGAGGTTCGTATTGCTCGAATTTTCAATACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTCGTTAGCAATTTTGTTGCACAGGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGAAGTTTCCAATATGTCTCTGATTTGGTTAATGGGCTGGTGGCTTTGATGGAAAGCGAACATGTGGGACCTTTCAACCTGGGTAACCCTGGGGAGTTTACCATGTTAGAGCTTGCTCAGGTTGTAAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACACATGAGGAAGCCAGATATTAGCAAAGCGAAGGAACTGCTGAACTGGGAGCCAAAAATCCCACTGAGAGAAGGGTTGCCTCTTATGGTTAATGATTTCCGAAATCGGATTCTGAATGAAGACGAAGGAAAAGGGATGAAATAA
>Glyma13g19640.1 sequence type=predicted peptide gene model=Glyma13g19640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQLHKQTSLNHRREEEMLGSSETSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGSTFFIIQPTLSRLGPPEPVHTFLPRTGLARFAGPGPRTGRVPVGIGGRRQRIVVTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRKQPLTVYGDGKQTRSFQYVSDLVNGLVALMESEHVGPFNLGNPGEFTMLELAQVVKETIDSSATIEYKPNTADDPHMRKPDISKAKELLNWEPKIPLREGLPLMVNDFRNRILNEDEGKGMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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