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Report for Sequence Feature Glyma13g19600

Feature Type:gene_model
Chromosome:Gm13
Start:23067007
stop:23068484
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g19600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55240AT Annotation by Michelle Graham. TAIR10: Plant protein 1589 of unknown function | chr3:20473876-20474705 REVERSE LENGTH=95 SoyBaseE_val: 2.00E-37ISS
GO:0032502GO-bp Annotation by Michelle Graham. GO Biological Process: developmental process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF09713PFAM Plant protein 1589 of unknown function (A thal 3526) JGI ISS
UniRef100_G7KVN5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01589 family protein n=1 Tax=Medicago truncatula RepID=G7KVN5_MEDTR SoyBaseE_val: 6.00E-34ISS
UniRef100_I1LYW4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYW4_SOYBN SoyBaseE_val: 9.00E-62ISS

Expression Patterns of Glyma13g19600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma13g19600 not represented in the dataset
Glyma13g19600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma13g19600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g133300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g19600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g19600
>Glyma13g19600.1   sequence type=CDS   gene model=Glyma13g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATTCTTCCTCAGCCGCTTATATCCACCTGGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCAGCACTGTATGGAAGGGGCTAGAGAAGGAAAACAAGGAGTTCTTCAAGGCCTATTCGAAGAGTAAAGCAGAGAGAGCTTCGAAGACAGAAGTTAGGCAAAAGATACACAAGATGGTTTCAGAATCACATTCTTCCAGTTCCAACGAACGAGTTTAG
Predicted protein sequences of Glyma13g19600
>Glyma13g19600.1   sequence type=predicted peptide   gene model=Glyma13g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSSSAAYIHLVHRLIEECILFHMSQEECMEALSKHANIKPVITSTVWKGLEKENKEFFKAYSKSKAERASKTEVRQKIHKMVSESHSSSSNERV*






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