Glyma13g19580 - SoyBase

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Report for Sequence Feature Glyma13g19580

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23051725
stop:	23058928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37420	AT	Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein \| chr2:15700550-15705165 FORWARD LENGTH=1039	SoyBase	E_val: 0	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0243	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF152	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
UniRef100_B9T432	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9T432_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CC04	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC04 related cluster n=1 Tax=unknown RepID=UPI000233CC04	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19580

Paralog	Evidence	Comments
Glyma10g05220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g133200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19580

Limit To All Plant Sequences

>Glyma13g19580.1   sequence type=CDS   gene model=Glyma13g19580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCCATTGACGCCTGACCAGTCTAACAAGAAAGTTGGGTCGGGCATGGCGGCTTCTCCGTCACCGTTCCTGACGCCTCGCCCGGAACGGCGCCGTCCCGATTCAAGGGGTTCCGATTGGGGCTCCAACCGTCAGGACAAGGATAAAGAGACCAACGTCCAAGTTTTGCTTCGATGCAGGCCATTAAGCGATGATGAGCTCAGATCGAACGTTCCCAAGGTGGTGACATGTAATGAAAACAAAAGGGAAGTCTCAGTTATGCAGACTCTAGCTAACAAACAAGTAGATAGAGTGTTCACCTTTGACAAGGTATTCGGACCTAAATCACAGCAAAGATCAATATACGAACAAGCCATTGCCCCAATTGTCAATGAAGTTCTCGATGGTTTCAATTGCACTGTTTTCGCTTATGGCCAGACAGGGACTGGTAAAACTTATACAATGGAGGGTGGAATGAGAAATAAGGGTGGTGATTTACCTGCTGAGGCTGGTGTCATTCCAAGAGCAGTGCGTCAAATTTTTGATATTTTGGAAGCACAAAATGCTGATTATAGCATAAAAGTGACATTCCTTGAGCTTTATAATGAAGAGATAACTGATTTGTTGTCCCCCGACGAGAATTCTAGGCCGACAGAGGAAAAACAAAAGAAACCTATAACCCTTATGGAAGATGGAAAGGGTAGTGTGTTTGTGAGAGGCCTTGAAGAAGAATCAGTATACAGTTTGAATGAAATTTACACTCTGTTGGAACGAGGAGCATCAAAAAGGCGCACTGCGGAAACATTGCTTAACAAGAGAAGCAGTCGTTCGCATTCAGTCTTCACCATTACTGTGTATGTGAAAGAAACAGTGATTGGTGATGAAGAGTTAATTAAATGTGGCAAGCTCAATCTTGTTGATCTGGCAGGATCGGAAAATATATTGCGTTCAGGAGCACGTGAGGGGCGTGCTAGAGAAGCAGGGGAGATAAACAAGAGCTTACTCACCCTGGGACGTGTCATAAATGCGCTTGTGGAACATTCTCCTCATGTGCCTTACAGAGATAGTAAGCTTACAAGGATTTTGCGAGACTCCTTGGGAGGGAAAACAAAAACATGTATAATTGCTACTATTTCCCCGTCTGCTTATTGTATGGAAGAAACACTTAGTACATTAGACTATGCTAGCCGTGCAAAAAGCATAAAGAATAAGCCTGAGGCAAACCAAAAGGTTTCGAAGGCTGTTTTGTTGAAGGACTTGTACATGGAAATTGATAGGATGAAAGAAGATATTCGAGCAGCTAGGGAAAAGAATGGTGTATATATTTCTCATGAAAGATTTGCCAAGGAAGAAGCTGAAAAGAAGGCAAGGAATGAGAAGATAGAGCAATTAGAGAATGACCTCAGTCTTAGTGAGAAGCAAGTGGACAGCTTCCGTGAGCTCTATTTAACAGAGCAAGAACAGAAACTGGAATTAGAAAGCGAGCTTAAGGATTGCAAGGTGAATTTGGAAAAAACCAGCAACAACTTGCATGATCTCCAAGAGAATTACAAGCTATTAGTTTCAACCTTGAAGGAGAAGGAACGCACCATTTCCAAGCTACTGAAATCAGAAAATGCCTTGATTGTGCGTGCAAAGGAAATGTGTACTGATCTGCAGAATGCATCGGATGATATTAATTTACTGTCCTCAAAGTTGGATCACAAAGAAAGACTGGAGGCAGAAAATCAAAAAACAATTTTGAAATTCGGATCTCTCTTAAATGAGAGCTTAAAGGACTTGCATACAACCATTATGGGATCTGTTTCTCAACAACATAAAGAACTTAGAAGCATGGAAGATCATGTCAGCTCCTATCTTGCCAGTAAAAATGATGCTGCACAAACTCTAGAGTCAAGGATCAACAAAATGACAGGAATTTACACTTCAGGGGTGGAGACCCTGAAGGAGCTAGCTAATACATTGCACATGAAAGCTTCATCTGATATGGAACAGATTCAATCTAAAGTTTCCTCGCAAACATTGGCCATTGAAAATTTTCTTGCCACTGCTGTTCATGAAGCCAAGGATGTAATATGCAACATCCAGAATTCTCTTGACGAGCAAAAGCAGCTGCTAGCATTCTCCCTTCAACAACAAGAAAAAGGATTACAACAAAGTCTGACTTCGGCACGGGTAGTTTCAGAGGCAGCTGTAAACTTCTTTGATGACATTCATCTACGTTCTTCAAGAGTCATGAAAATTCTTGAAGAAAATCAAAATGAGAGGTTCCAGCAGTTAACTAACTTTGAGAAGAAGTTCAAGGAAGAGGTTGAGAGAGAGGAGGAGCAGGCCTTAGAGAAAATTGCAGAAATTTTGGCAGCCTTGACATCTAAGAAAACTGCTATGGTCTCAGAGGCATCAAGACATATGCAGGACACAAGCATGCAACAGTCTAAGAGATTGCAGCTAGAGATGCTCAACATGCAGCAAGTTTCAAAAGATGGTACTAAGGAAGTTGGTGAGTATGTAGAGAATGTGAAAAGTCATTATGTGCAACAAATATTCTCAGCCAGTGATATTAAAGCTACCATGGAGAATTGCCTCTTGGAGTGCTCAAAAACAGTGGACAATTCTAAGAAGCAGTGGGAAAGTGCCAACTTGTCCCTCTGTAATCTCCAGAAGAACAATCTGGCAGAGATACAATCCTCAGTGAAGGAAAACATCTTGACAAATCATATTCTGAATCAAGAATTTGTGTCTGCATCATTATCTATGAATTCAGATTATGATGTAGTAACACGCAACCTGCGGGCAGATGTAAATGGTGCACTGATGCTGGACCATGAGAATAAGAAGGCAATTGATTCCATGACTACAAGATGGTTGGAGCAGCTTAACTCATTACAAGATAAGAATGGTGAAGATGTATCAAATATCAATGTTCAAGCAGAAAAAAGCCTGGTTAAAGATTACTTGGTTGACCATAATGCAAGATCTCAGAAAAGAATTATACCAGTTCCCAGCCCAGCATCCATTGAGGATATGAGGGCAACGATCATAGAGAACTCATTAAAATTGATCCAAACAGAAAGCAAAATCACACGTCTGGCAGCATCTCCAAATAGAACTCCTTTCGCAGACGTGAATTCAGTCAATGACGACTGTAGTTAG

Predicted protein sequences of Glyma13g19580

Limit To All Plant Sequences

>Glyma13g19580.1   sequence type=predicted peptide   gene model=Glyma13g19580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMPLTPDQSNKKVGSGMAASPSPFLTPRPERRRPDSRGSDWGSNRQDKDKETNVQVLLRCRPLSDDELRSNVPKVVTCNENKREVSVMQTLANKQVDRVFTFDKVFGPKSQQRSIYEQAIAPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDLPAEAGVIPRAVRQIFDILEAQNADYSIKVTFLELYNEEITDLLSPDENSRPTEEKQKKPITLMEDGKGSVFVRGLEEESVYSLNEIYTLLERGASKRRTAETLLNKRSSRSHSVFTITVYVKETVIGDEELIKCGKLNLVDLAGSENILRSGAREGRAREAGEINKSLLTLGRVINALVEHSPHVPYRDSKLTRILRDSLGGKTKTCIIATISPSAYCMEETLSTLDYASRAKSIKNKPEANQKVSKAVLLKDLYMEIDRMKEDIRAAREKNGVYISHERFAKEEAEKKARNEKIEQLENDLSLSEKQVDSFRELYLTEQEQKLELESELKDCKVNLEKTSNNLHDLQENYKLLVSTLKEKERTISKLLKSENALIVRAKEMCTDLQNASDDINLLSSKLDHKERLEAENQKTILKFGSLLNESLKDLHTTIMGSVSQQHKELRSMEDHVSSYLASKNDAAQTLESRINKMTGIYTSGVETLKELANTLHMKASSDMEQIQSKVSSQTLAIENFLATAVHEAKDVICNIQNSLDEQKQLLAFSLQQQEKGLQQSLTSARVVSEAAVNFFDDIHLRSSRVMKILEENQNERFQQLTNFEKKFKEEVEREEEQALEKIAEILAALTSKKTAMVSEASRHMQDTSMQQSKRLQLEMLNMQQVSKDGTKEVGEYVENVKSHYVQQIFSASDIKATMENCLLECSKTVDNSKKQWESANLSLCNLQKNNLAEIQSSVKENILTNHILNQEFVSASLSMNSDYDVVTRNLRADVNGALMLDHENKKAIDSMTTRWLEQLNSLQDKNGEDVSNINVQAEKSLVKDYLVDHNARSQKRIIPVPSPASIEDMRATIIENSLKLIQTESKITRLAASPNRTPFADVNSVNDDCS*

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