Glyma13g19540 - SoyBase

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Report for Sequence Feature Glyma13g19540

Feature Type:	gene_model
Chromosome:	Gm13
Start:	23019994
stop:	23027157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37440	AT	Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein \| chr2:15719230-15721885 FORWARD LENGTH=479	SoyBase	E_val: 0	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG0565	KOG	Inositol polyphosphate 5-phosphatase and related proteins	JGI		ISS
PTHR11200	Panther	INOSITOL 5-PHOSPHATASE	JGI		ISS
PTHR11200:SF29	Panther	INOSITOL PHOSPHATASE SKIP	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7L0M4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7L0M4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CC01	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CC01 related cluster n=1 Tax=unknown RepID=UPI000233CC01	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19540

Paralog	Evidence	Comments
Glyma10g05170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g132700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g19540

Limit To All Plant Sequences

>Glyma13g19540.3   sequence type=transcript   gene model=Glyma13g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTTTATTATCTCTCTGACCCCAAATTCTTATTTTTTTTCCTTTTCATTTTCGGGTTACAGTCTTCATGGCCAAAATTTAATGTAAGAAAGTGGCTCAATATAAGGAGCAACGATGATAAATTTCACTCAGATGCGTCATATTACTCTTTACCAGAGGGGTGGCTGATGGACTCCACAAATGAATTGAAACATTCGGCATCAGTGATGGAGGCACCATCTGTCATTGACATTGACACGCTCAACCTTAGGATGTTCGTGGGGACTTGGAATGTTGGAGGAAAGTCACCCAACGAGGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACAAGCTGACATCTATGTCATTGGGTTCCAAGAAATTATACCTCTAAACGCAGGAAACGTGCTTGGGCCAGAGGACAGTGGCCCAGCATCGAAATGGCTGAACCTTATTCGTCAAGCCTTGAACTCTAACACAAGCTCCAGTGGAGAAAATTCTCCTACATCGTCTTTTAACAGTAGAAGGCAATGCTGCCCAAATGAACAACACTATTATTGCCTAGCAGCAAGCAAACAAATGGTGGGTATCTTCTTGTGTGTGTGGGTACGTGCGGATCTTTACAAGCATGTCAGCAAGTTAAAGGTGTCTTGTGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCAATATCAATTAGCATGACATTGTACCACACAACGTTCTGCTTCGTTTGTACCCACTTGGCCTCCGGAGAGAAAGATGGTGATGAGGTGCGAAGAAATTTGGACGTTTCAGAGATATTAAAGAAAACTAAATTTTCACACTCATTCAAAGCACTTGGCCAACCACTCCCTCCTGAAAGCATATTAGAGCATGATAAGATAATTTGGCTTGGGGATTTGAATTATCGCCTTGCTGCTGCTTACGATGATACACTTGGGCTGCTGAAGAAGAATGATTGGCAGGCACTATTAGAGAAGGATCAGCTAAGGATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAGTGGAAGGAAGGGAAGATATACTTTGCTCCAACTTACAAATATTTATTTGATTCTGACCAATATGTTGCCCAAACTAACAAGTCCAAGGAAAAACGACGAACTCCGGCTTGGTGTGATCGAATTCTATGGAGAGGTGAAGGCGTGGAGCAGCTATGGTATGTGCGAGGAGAGTCCAAATTCTCAGACCACAGGCCAGTGTATTCACTATTCTCGGTTGACGTGGACTTGACATGTAACAAGCTAAGTAGTCCCTCTATTGCTGCATCAGATAGCAGCTCAATAATCTCAACAAGGTCGTGTTCCTCTAGACCCTTAACAAACGCTGCCTTGTCCTCATCTTGCTTTGCTAAAGTTCAGGCTGAGGAACAACTTTTGTTACTAACCAGGGTACATAGACACAGGGTTCTGACTTAGTACATAGGATACTATACAAACACTTTCCGAGAAAGTAAAGTAAGTACATAAGAGACACGACCACCAAGTTGCCGCAGCTCGCGGTGTGCCCTGACAAAGCGTAAAGTGAGGGAAAATCAAACATTAGTTGTCATGGTTCGGGTTCTGTGTTCCTCACTTTTTTTGTTGAAACAGAGGATGGATTAGTCTTTTATGGGGTAAAAAGATTAGGTTCTTTTCCAAGGATATTGCTAAAAAGTGTTTTTTAGCATATTGGTTAAGAAATTAAAAGAAAAAAATATTTATTGTAAAAATTATAGAAGAATATAAAAAAATAATTAACAACATAATTTTATACATCTCTATAAGAAAATCTTTCTTATTTTAATTTCTTAAGCAATACTCTAAGAATACTTCCTAGATGGCCTTTGCCCTTTTCATAATTGCTCTCATGCGAGCCTTGGCAATTTGGCATGCACCCTTCTGGCCCAGATGAAAACTATGTGACATGTTGAGCTAGCAATGATTAGAGGACTGCATTTGGTGTAAAAAGTGAGAAACAGAAGCGTGGCAGCGATTGAAGTGAAGAAAATAATGGCTCGATGTGTGGGAATCTCTAATCATGCGTGCTCTTTTTTTAAGCTTTTTGGGTATTAGAGGCTTAGCTTTTTTTATATAAGCTTGGAATCTTGAAAAGGTTTGGTTGTTTTAGTAGAGGCCGGGGGATGATTTGCATTTTGATAATCGGATCGGTGGAGGTGAGATTGATAGCTGTTGAAAGTTGTAAATTAAACTGTTTATCAGTTTTGTTATCGTTATTCAATACAATGTATGGAATTTTGTTATGTGAAAAATCTATAGCAGCTTAGT

Coding sequences of Glyma13g19540

Limit To All Plant Sequences

>Glyma13g19540.2   sequence type=CDS   gene model=Glyma13g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACAGAGTTGAAGAAGAAGATATCCAAGTCTTCATGGCCAAAATTTAATGTAAGAAAGTGGCTCAATATAAGGAGCAACGATGATAAATTTCACTCAGATGCGTCATATTACTCTTTACCAGAGGGGTGGCTGATGGACTCCACAAATGAATTGAAACATTCGGCATCAGTGATGGAGGCACCATCTGTCATTGACATTGACACGCTCAACCTTAGGATGTTCGTGGGGACTTGGAATGTTGGAGGAAAGTCACCCAACGAGGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACAAGCTGACATCTATGTCATTGGGTTCCAAGAAATTATACCTCTAAACGCAGGAAACGTGCTTGGGCCAGAGGACAGTGGCCCAGCATCGAAATGGCTGAACCTTATTCGTCAAGCCTTGAACTCTAACACAAGCTCCAGTGGAGAAAATTCTCCTACATCGTCTTTTAACAGTAGAAGGCAATGCTGCCCAAATGAACAACACTATTATTGCCTAGCAGCAAGCAAACAAATGGTGGGTATCTTCTTGTGTGTGTGGGTACGTGCGGATCTTTACAAGCATGTCAGCAAGTTAAAGGTGTCTTGTGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCAATATCAATTAGCATGACATTGTACCACACAACGTTCTGCTTCGTTTGTACCCACTTGGCCTCCGGAGAGAAAGATGGTGATGAGGTGCGAAGAAATTTGGACGTTTCAGAGATATTAAAGAAAACTAAATTTTCACACTCATTCAAAGCACTTGGCCAACCACTCCCTCCTGAAAGCATATTAGAGCATGATAAGATAATTTGGCTTGGGGATTTGAATTATCGCCTTGCTGCTGCTTACGATGATACACTTGGGCTGCTGAAGAAGAATGATTGGCAGGCACTATTAGAGAAGGATCAGCTAAGGATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAGTGGAAGGAAGGGAAGATATACTTTGCTCCAACTTACAAATATTTATTTGATTCTGACCAATATGTTGCCCAAACTAACAAGTCCAAGGAAAAACGACGAACTCCGGCTTGGTGTGATCGAATTCTATGGAGAGGTGAAGGCGTGGAGCAGCTATGGTATGTGCGAGGAGAGTCCAAATTCTCAGACCACAGGCCAGTGTATTCACTATTCTCGGTTGACGTGGACTTGACATGTAACAAGCTAAGTAGTCCCTCTATTGCTGCATCAGATAGCAGCTCAATAATCTCAACAAGGTCGTGTTCCTCTAGACCCTTAACAAACGCTGCCTTGTCCTCATCTTGCTTTGCTAAAGTTCAGGCTGAGGAACAACTTTTGTTACTAACCAGGGTACATAGACACAGGGTTCTGACTTAG

>Glyma13g19540.3   sequence type=CDS   gene model=Glyma13g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCCACAAATGAATTGAAACATTCGGCATCAGTGATGGAGGCACCATCTGTCATTGACATTGACACGCTCAACCTTAGGATGTTCGTGGGGACTTGGAATGTTGGAGGAAAGTCACCCAACGAGGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACAAGCTGACATCTATGTCATTGGGTTCCAAGAAATTATACCTCTAAACGCAGGAAACGTGCTTGGGCCAGAGGACAGTGGCCCAGCATCGAAATGGCTGAACCTTATTCGTCAAGCCTTGAACTCTAACACAAGCTCCAGTGGAGAAAATTCTCCTACATCGTCTTTTAACAGTAGAAGGCAATGCTGCCCAAATGAACAACACTATTATTGCCTAGCAGCAAGCAAACAAATGGTGGGTATCTTCTTGTGTGTGTGGGTACGTGCGGATCTTTACAAGCATGTCAGCAAGTTAAAGGTGTCTTGTGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCAATATCAATTAGCATGACATTGTACCACACAACGTTCTGCTTCGTTTGTACCCACTTGGCCTCCGGAGAGAAAGATGGTGATGAGGTGCGAAGAAATTTGGACGTTTCAGAGATATTAAAGAAAACTAAATTTTCACACTCATTCAAAGCACTTGGCCAACCACTCCCTCCTGAAAGCATATTAGAGCATGATAAGATAATTTGGCTTGGGGATTTGAATTATCGCCTTGCTGCTGCTTACGATGATACACTTGGGCTGCTGAAGAAGAATGATTGGCAGGCACTATTAGAGAAGGATCAGCTAAGGATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAGTGGAAGGAAGGGAAGATATACTTTGCTCCAACTTACAAATATTTATTTGATTCTGACCAATATGTTGCCCAAACTAACAAGTCCAAGGAAAAACGACGAACTCCGGCTTGGTGTGATCGAATTCTATGGAGAGGTGAAGGCGTGGAGCAGCTATGGTATGTGCGAGGAGAGTCCAAATTCTCAGACCACAGGCCAGTGTATTCACTATTCTCGGTTGACGTGGACTTGACATGTAACAAGCTAAGTAGTCCCTCTATTGCTGCATCAGATAGCAGCTCAATAATCTCAACAAGGTCGTGTTCCTCTAGACCCTTAACAAACGCTGCCTTGTCCTCATCTTGCTTTGCTAAAGTTCAGGCTGAGGAACAACTTTTGTTACTAACCAGGGTACATAGACACAGGGTTCTGACTTAG

Predicted protein sequences of Glyma13g19540

Limit To All Plant Sequences

>Glyma13g19540.2   sequence type=predicted peptide   gene model=Glyma13g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTELKKKISKSSWPKFNVRKWLNIRSNDDKFHSDASYYSLPEGWLMDSTNELKHSASVMEAPSVIDIDTLNLRMFVGTWNVGGKSPNEGLNLRDWLMLPSQADIYVIGFQEIIPLNAGNVLGPEDSGPASKWLNLIRQALNSNTSSSGENSPTSSFNSRRQCCPNEQHYYCLAASKQMVGIFLCVWVRADLYKHVSKLKVSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKDGDEVRRNLDVSEILKKTKFSHSFKALGQPLPPESILEHDKIIWLGDLNYRLAAAYDDTLGLLKKNDWQALLEKDQLRIEQRAGRVFKEWKEGKIYFAPTYKYLFDSDQYVAQTNKSKEKRRTPAWCDRILWRGEGVEQLWYVRGESKFSDHRPVYSLFSVDVDLTCNKLSSPSIAASDSSSIISTRSCSSRPLTNAALSSSCFAKVQAEEQLLLLTRVHRHRVLT*

>Glyma13g19540.3   sequence type=predicted peptide   gene model=Glyma13g19540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTNELKHSASVMEAPSVIDIDTLNLRMFVGTWNVGGKSPNEGLNLRDWLMLPSQADIYVIGFQEIIPLNAGNVLGPEDSGPASKWLNLIRQALNSNTSSSGENSPTSSFNSRRQCCPNEQHYYCLAASKQMVGIFLCVWVRADLYKHVSKLKVSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKDGDEVRRNLDVSEILKKTKFSHSFKALGQPLPPESILEHDKIIWLGDLNYRLAAAYDDTLGLLKKNDWQALLEKDQLRIEQRAGRVFKEWKEGKIYFAPTYKYLFDSDQYVAQTNKSKEKRRTPAWCDRILWRGEGVEQLWYVRGESKFSDHRPVYSLFSVDVDLTCNKLSSPSIAASDSSSIISTRSCSSRPLTNAALSSSCFAKVQAEEQLLLLTRVHRHRVLT*

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