Glyma13g19500 - SoyBase

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Report for Sequence Feature Glyma13g19500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22980602
stop:	22985043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53620	AT	Annotation by Michelle Graham. TAIR10: pyrophosphorylase 4 \| chr3:19881491-19883308 FORWARD LENGTH=216	SoyBase	E_val: 1.00E-136	ISS
GO:0006796	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004427	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity	SoyBase	N/A	ISS
KOG1626	KOG	Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38	JGI		ISS
PTHR10286	Panther	INORGANIC PYROPHOSPHATASE	JGI		ISS
PF00719	PFAM	Inorganic pyrophosphatase	JGI		ISS
UniRef100_C6T497	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T497_SOYBN	SoyBase	E_val: 1.00E-156	ISS
UniRef100_G7ICM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Soluble inorganic pyrophosphatase n=3 Tax=Medicago truncatula RepID=G7ICM1_MEDTR	SoyBase	E_val: 1.00E-141	ISS

Expression Patterns of Glyma13g19500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19500

Paralog	Evidence	Comments
Glyma10g05130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g132400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g19500

Limit To All Plant Sequences

>Glyma13g19500.2   sequence type=transcript   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAACAGATATTCTCTGATTCTTTCTCCTTATTTAATTTAATTTTGAATAAAGGTGAAGTGGCTATGGCCTGTGTCTGTGAAACAACAAGGAGAGCGGGAACGCGTTGCGTACACCTCACATCCTCCTCCTCTACATAAGCGCCCTCGCATCCCATTCTTTGCAGACTCAACAAGCATTCCACTCACACCTCATCGTTTCTCTCTCTAGATCTCTGTTTCTTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTATTCAAAGGCTGCTATTATAATTACGATTATGACGATAACAAAAGCTTTCTATCCTTGTCGCGTGTGCATTGGTCTCAGGGCTGCAACATGCATATTCTACACATGTGCTTAGTTTTGAGTGAATGATTTTTTCATTTATTAATATCAAAGTTTTATTATTGTAGCTCACTCTACCAAATATTTGGAGCATATGGGATTCTTACATCTTATATAAAGCATTTTTACAACAAATATTAGTACTATGTTTTGTGCTTATTGCCACTGTTTACCCGAAAAATTGCATCGAATCAAGATCAAAACTATTTCATCGCGTGTGCAAATAATACGCGATAAGAAAATTGGTGCCTCGTAAATTTGCAGAGAGCAATGTCAATGTGTATGGTTGTACCAGGATGACACGTGCAAAACAAGGGCATGTTTACGGTTCAAGCAACTTATTAAAGATGGAAATGATTTAAAATTTTATATCTAGCTTGCCTCGTTTATTAAATATATATGCTTCATGAC

>Glyma13g19500.5   sequence type=transcript   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAACAGATATTCTCTGATTCTTTCTCCTTATTTAATTTAATTTTGAATAAAGGTGAAGTGGCTATGGCCTGTGTCTGTGAAACAACAAGGAGAGCGGGAACGCGTTGCGTACACCTCACATCCTCCTCCTCTACATAAGCGCCCTCGCATCCCATTCTTTGCAGACTCAACAAGCATTCCACTCACACCTCATCGTTTCTCTCTCTAGATCTCTGTTTCTTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGTTAGCATCTACATAACAGCGAAATACACAAGTATCATTTGGTGCGCCATGTAAAATCAAACTATTTTTGTGTTTTTCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATGTAAGTAGCAGCCATCTGATTCATGATCACTAAACCGTTTTTTATCCATTAAGTAATGGGTAATTGATCACTTTAACTCGTCCAATTTTGACATTTTTTTTAAAAATGTTTTAAGGTTTCAATTTTAATACTTCTCTTTTTATTCATGCGCAAGAATGATATGAAGTTTAAAACCTTTTTATTTTGTTGTGAGAAGGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTATTCAAAGGCTGCTATTATAATTACGATTATGACGATAACAAAAGCTTTCTATCCTTGTCGCGTGTGCATTGGTCTCAGGGCTGCAACATGCATATTCTACACATGTGCTTAGTTTTGAGTGAATGATTTTTTCATTTATTAATATCAAAGTTTTATTATTGTAGCTCACTCTACCAAATATTTGGAGCATATGGGATTCTTACATCTTATATAAAGCATTTTTACAACAAATATTAGTACTATGTTTTGTGCTTATTGCCACTGTTTACCCGAAAAATTGCATCGAATCAAGATCAAAACTATTTCATCGCGTGTGCAAATAATACGCGATAAGAAAATTGGTGCCTCGTAAATTTGCAGAGAGCAATGTCAATGTGTATGGTTGTACCAGGATGACACGTGCAAAACAAGGGCATGTTTACGGTTCAAGCAACTTATTAAAGATGGAAATGATTTAAAATTTTATATCTAGCTTGCCTCGTTTATTAAATATATATGCTTCATGAC

>Glyma13g19500.6   sequence type=transcript   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAAACAGATATTCTCTGATTCTTTCTCCTTATTTAATTTAATTTTGAATAAAGGTGAAGTGGCTATGGCCTGTGTCTGTGAAACAACAAGGAGAGCGGGAACGCGTTGCGTACACCTCACATCCTCCTCCTCTACATAAGCGCCCTCGCATCCCATTCTTTGCAGACTCAACAAGCATTCCACTCACACCTCATCGTTTCTCTCTCTAGATCTCTGTTTCTTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGTTAGCATCTACATAACAGCGAAATACACAAGTATCATTTGGTGCGCCATGTAAAATCAAACTATTTTTGTGTTTTTCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTATTCAAAGGCTGCTATTATAATTACGATTATGACGATAACAAAAGCTTTCTATCCTTGTCGCGTGTGCATTGGTCTCAGGGCTGCAACATGCATATTCTACACATGTGCTTAGTTTTGAGTGAATGATTTTTTCATTTATTAATATCAAAGTTTTATTATTGTAGCTCACTCTACCAAATATTTGGAGCATATGGGATTCTTACATCTTATATAAAGCATTTTTACAACAAATATTAGTACTATGTTTTGTGCTTATTGCCACTGTTTACCCGAAAAATTGCATCGAATCAAGATCAAAACTATTTCATCGCGTGTGCAAATAATACGCGATAAGAAAATTGGTGCCTCGTAAATTTGCAGAGAGCAATGTCAATGTGTATGGTTGTACCAGGATGACACGTGCAAAACAAGGGCATGTTTACGGTTCAAGCAACTTATTAAAGATGGAAATGATTTAAAATTTTATATCTAGCTTGCCTCGTTTATTAAATATATATGCTTCATGAC

Coding sequences of Glyma13g19500

Limit To All Plant Sequences

>Glyma13g19500.1   sequence type=CDS   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAG

>Glyma13g19500.2   sequence type=CDS   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGAATTAG

>Glyma13g19500.5   sequence type=CDS   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGTTAGCATCTACATAA

>Glyma13g19500.6   sequence type=CDS   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAGACACGTTGCTGCACACCCGTGGCACGATCTTGAGATAGGACCCGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATAGGGAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAGAACTGGACTTATTATGGTTGATCGTATACTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATTCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATTATGCAGGAGCCAGTTCTTCCGGGTTGCTTTCTTCGGGCCAAAGCTATTGGTCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGAGCTTCCTCCACACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGCACTTCCTATATGTTAGCATCTACATAA

Predicted protein sequences of Glyma13g19500

Limit To All Plant Sequences

>Glyma13g19500.1   sequence type=predicted peptide   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPIETPNKVSSYQQSPNPRLNERILSSISRRHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAYEAIKHSMTLYAEYVVENLRR*

>Glyma13g19500.2   sequence type=predicted peptide   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPIETPNKVSSYQQSPNPRLNERILSSISRRHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSKNFKMCLFSTSYMN*

>Glyma13g19500.5   sequence type=predicted peptide   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPIETPNKVSSYQQSPNPRLNERILSSISRRHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSKNFKMCLFSTSYMLAST*

>Glyma13g19500.6   sequence type=predicted peptide   gene model=Glyma13g19500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPIETPNKVSSYQQSPNPRLNERILSSISRRHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILSKNFKMCLFSTSYMLAST*

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