SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37500 | AT | Annotation by Michelle Graham. TAIR10: arginine biosynthesis protein ArgJ family | chr2:15739904-15742689 REVERSE LENGTH=468 | SoyBase | E_val: 0 | ISS |
| GO:0006526 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004042 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0004358 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate N-acetyltransferase activity | SoyBase | N/A | ISS |
| KOG2786 | KOG | Putative glutamate/ornithine acetyltransferase | JGI | ISS | |
| PTHR23100 | Panther | ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ | JGI | ISS | |
| PF01960 | PFAM | ArgJ family | JGI | ISS | |
| UniRef100_I1LYU9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arginine biosynthesis bifunctional protein ArgJ, chloroplastic 1 n=1 Tax=Glycine max RepID=I1LYU9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYU9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Arginine biosynthesis bifunctional protein ArgJ, chloroplastic 1 n=1 Tax=Glycine max RepID=I1LYU9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g19450 not represented in the dataset |
Glyma13g19450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g05090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g131900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19450.2 sequence type=transcript gene model=Glyma13g19450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCATCTGAGTGTTAACTATTTGTACCAAAAAAAAATCTGAGTGTTTAGTATAAGTATTTATTATGTCTGCAAATTTGAAGCGTATGTCTATACTTATCGTAGGTAATTTGTCCGCCTTGTTCTCGGTGTTTAACTGTGTCCCTGGGTGGAAGAATCTGCGCAGCTGCCAAAACGTTACTACATTTGAGAGAAGTAACGCCGAAACTCCAGCAACATAGTAGAGTATTTATTAGCTACACACGGAGTTCACTAACCTTCCCCGCTTCTGATCAAAATCAAACTGCGAAAACCCTAAAACCCTAGTACATTACATTTGAGAAAGAAAAAAAAAATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAAAGTTGACCTTGTACCATACTACAATTTCATCACTATTTTGTCATCTCATATTTTCATTCTTTTCCTTTGAACAAACTAATATATTGATGTACTTAAACTCTTGCTCCCTTGCTGGAAGCTTCACCTTTCTAGTAAAACTGGCAAATGAATTACTATGACTGTTTTGCTGGAAGTAGTATCATAGTCCATTTGGAATCAGATATTCAGTAATATGCAGGGGGGGTGTAAGCATAACACCCATTTCTTTTTCTGGTAAATGATGTTGTAACCCCCCTGCTCCCATTCATTTCAAGAAAAAAGGCCTGCAAAAATGCCTGAAACTCCTTTTTGTCATCCTTTATTCCAACCTCCTTCAGATGTAAGCATAATTTATTCTTCAAAAGTGCCCAGTCAGAAAATGTGAAGTTTTGAGTTGATTGTTCTTTCCAGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTATTTTTTTGTGTCAAGGATAAGGATATTTGCATCATGACTGTTGATTTATGTGACTGTTGTTTTATATTCCAATATTAATCCTCCACAGTCCTTGTGCATGAATCATGATTGAAACTTTCTTTACTCTTTTAACAAAACAAGTGATAGTTTTCATCCTGCCTTGTTTTCGAAGAACCTCATCAATTCAAATATTTGTTAATTAATGAATAAAAATGCAGGGTTTGAGTGATAAATAAAATCAAAATAAATTTAAATAATATATCCCCCATTGTTTCTCCACTTTCTTATATTTTTCCTCCATCCTTATCACCACTGCCTTTTCTGTTATAACTGATTTTCTTGTCTCATTTT
>Glyma13g19450.1 sequence type=CDS gene model=Glyma13g19450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAATGCAAGGTCTTGCCAAATCAATAGCTTGGGATGGGGAAGGAGCAACATGCCTCGTTGAGGTCTGTGTGACTGGTGCAAATAGTGAGGCTGAAGCTGCAAAAGTTGCGCGTTCAGTTGCATCATCTTCACTTGTAAAGGCTGCTATATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGGGGGATATTTTACTAATGGATGGCGGGGAACCACAATTATTTGACCGGCACGCGGCTAGTAGTTATCTTAGAAAGGCTGGGGAGACTCACGACACGGTTAAAATTCAGATATCAGTTGGCAATGGACCAGGACGTGGACAAGCATGGGGATGTGATTTAAGCTACGATTATGTTAAAATAAATGCTGAGTACACAACATAG >Glyma13g19450.2 sequence type=CDS gene model=Glyma13g19450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATTCGTGTATTCCTCAGCATCTTTTTCTGCACCTTCACTTGGCATCTTCCCCAAACCCAAAGGCGTTTAATTCTCCCCTACGCAATTTGAGGATCCGTGCCGTTTCAACCAAAGAGAATCACATACCAGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAACCAGATTCCAGGTGGAGTTACTGCTGCCGAGGGATTCAAAGCTGCGGGAATGTACGGAGGTTTACGTGCCAAAGGAGAAAAGCCTGATCTCGCGCTTGTCACGTGCGATGTTGATGCAGTATCTGCAGGATCGTTTACAACAAATGTGGTTGCGGCTGCACCGGTGTTATACTGCAAAAGGACGTTGGATATTTCCAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAAGCAAATGCAGCGACGGGCAAAGAAGGTTACCAGGACATGATAGAATGTGTGGAAAGCCTTGCTAAGCTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGGGGGCACTTTTGAACTCACTTCCCACTCTAGTAAATTCACTGTCATCTTCAGTTGAGGGGGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCCCGGTTAACCAGTGATGTTTGGAGAAAGATGGTGCAGGTTGCTGTAAACCGAAGTTTCAACCAGATAACTGTAGATGGAGATACTAGTACTAATGATACTGTTATTGCCTTGGCTAGTGGGTTGTCTGGGCTTGGTTGCATATCTTCTCTAGACAGTGATGAGGCTATTCAACTTCAGGCATGCCTAGATGCGGTAAAGTTGACCTTGTACCATACTACAATTTCATCACTATTTTGTCATCTCATATTTTCATTCTTTTCCTTTGAACAAACTAATATATTGATGTACTTAAACTCTTGCTCCCTTGCTGGAAGCTTCACCTTTCTAGTAAAACTGGCAAATGAATTACTATGA
>Glyma13g19450.1 sequence type=predicted peptide gene model=Glyma13g19450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYSCIPQHLFLHLHLASSPNPKAFNSPLRNLRIRAVSTKENHIPAAPIFLPEGPWNQIPGGVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLDSDEAIQLQACLDAVMQGLAKSIAWDGEGATCLVEVCVTGANSEAEAAKVARSVASSSLVKAAIYGRDPNWGRIAAAAGYSGVSFHQDLLRVELGDILLMDGGEPQLFDRHAASSYLRKAGETHDTVKIQISVGNGPGRGQAWGCDLSYDYVKINAEYTT* >Glyma13g19450.2 sequence type=predicted peptide gene model=Glyma13g19450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYSCIPQHLFLHLHLASSPNPKAFNSPLRNLRIRAVSTKENHIPAAPIFLPEGPWNQIPGGVTAAEGFKAAGMYGGLRAKGEKPDLALVTCDVDAVSAGSFTTNVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGKEGYQDMIECVESLAKLLKVKPEEVLIESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLIGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARLTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLDSDEAIQLQACLDAVKLTLYHTTISSLFCHLIFSFFSFEQTNILMYLNSCSLAGSFTFLVKLANELL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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