Glyma13g19390 - SoyBase

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Report for Sequence Feature Glyma13g19390

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22920000
stop:	22925341
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02540	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr5:568609-570720 FORWARD LENGTH=331	SoyBase	E_val: 2.00E-163	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1208	KOG	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	JGI		ISS
PTHR24320	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7ZZL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Retinol dehydrogenase n=2 Tax=Medicago truncatula RepID=G7ZZL2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LYU4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYU4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19390

Paralog	Evidence	Comments
Glyma10g05030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g131400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19390

Limit To All Plant Sequences

>Glyma13g19390.1   sequence type=CDS   gene model=Glyma13g19390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGAATCTTTTCGTTGATTACAGGGAGACCGGGATGTAGTGGATTCGGATCTTCCTCAACTGCTGAACAGGTTATCGAAGGAATTGATGCCAGCAACCTCACTGCAATCATCACAGGAGGAGCCAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGCCCATGTCATAATTGCTGCCAGAAACATGGAGTCTGCAAAGGAAGCGAAACAACTCATACTTGAGGAAGACGAGTCAGCTCGTGTGGACATAATGAAGCTCGACCTATGCTCAGTGAAGTCTGTCGGAACCTTTGTGGACAACTTCATTGCTCTTGGTGTTCCTCTTAACATCTTAATAAACAACGCGGGAGTCATGTTCTGCCCTTATCAGCAAACGGAAGATGGGATTGAGATGCAGTTTGCAACCAATCATCTTGGTCATTTTCTCTTGACGAAACTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCATAAATCTTTCATCAATAGCTCATGTCTACACTTACGAAGAAGGAATTCGATTTGATAACATCAATGATGAAGATGGATACTCTGACAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTTATGAATTTTCTGAAGATGTTTACCTTTTTCGCATGGAAGAACATCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACTTTCGGGATTGTAATGAGTGTCAACCAAGTACACATGCTTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGA

Predicted protein sequences of Glyma13g19390

Limit To All Plant Sequences

>Glyma13g19390.1   sequence type=predicted peptide   gene model=Glyma13g19390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGIFSLITGRPGCSGFGSSSTAEQVIEGIDASNLTAIITGGASGIGLETARVLAIRKAHVIIAARNMESAKEAKQLILEEDESARVDIMKLDLCSVKSVGTFVDNFIALGVPLNILINNAGVMFCPYQQTEDGIEMQFATNHLGHFLLTKLLLDKMKQTAKDTGIEGRIINLSSIAHVYTYEEGIRFDNINDEDGYSDKKAYGQSKLANILHTNELSRRLQAEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFFAWKNIPQGAATTCYVALHPSLKGVTGKYFRDCNECQPSTHASNELLGRKLWDFSNKMINSLSKA*

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