Glyma13g19370 - SoyBase

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Report for Sequence Feature Glyma13g19370

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22903710
stop:	22907443
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53720	AT	Annotation by Michelle Graham. TAIR10: cation/H+ exchanger 20 \| chr3:19905826-19910027 REVERSE LENGTH=842	SoyBase	E_val: 0	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006885	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pH	SoyBase	N/A	ISS
GO:0030007	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis	SoyBase	N/A	ISS
GO:0030104	GO-bp	Annotation by Michelle Graham. GO Biological Process: water homeostasis	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0012505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endomembrane system	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005451	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transport	SoyBase	N/A	ISS
GO:0015299	GO-mf	Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity	SoyBase	N/A	ISS
GO:0015385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity	SoyBase	N/A	ISS
KOG1650	KOG	Predicted K+/H+-antiporter	JGI		ISS
PTHR16254	Panther	POTASSIUM/PROTON ANTIPORTER-RELATED	JGI		ISS
PF00999	PFAM	Sodium/hydrogen exchanger family	JGI		ISS
UniRef100_I1LYU2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYU2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HVU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: K(+)/H(+) antiporter n=1 Tax=Medicago truncatula RepID=Q2HVU7_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19370

Paralog	Evidence	Comments
Glyma10g05010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g131200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19370

Limit To All Plant Sequences

>Glyma13g19370.1   sequence type=CDS   gene model=Glyma13g19370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTAAACATAACCTCCATCAAAACATCCTCCAACGGCTTATGGCAAGGAGACAACCCCTTAGACTTCGCCTTCCCTCTCCTCATTCTCCAAATCACCTTAATCATCCTCCTCTCCCGCTCTCTCGCCTTCCTCCTCAAACCTATCCGACAACCTAAAGTCATCGCCCAAATTATAGCTGGGATTGTCTTGGGTCCTTCCGTTCTGGGAAGGAACAAGACATTCAAGCACCGCCTGTTCCCGCCATGGAGCACCCCGTTGCTGGAATCGCTGGCTAGCATAGGTCTCCTCTTCTTCTTGTTCCTGGTAGGTCTCGAGCTCGACTTGGTCACGATTCGCCGGAGTGGAAAGAGAGCTCTGAGCATCGCCGTCGCCGGAATGTCCCTCCCCTTCGTCTCCGGCATTGGCCTCGCCCTAATCCTCCGCAAGACCGTCGACGGCACCGACAGAGTCGGCTTCGCTCAGTTCCTCGTCTTCATGGGAGTGGCGATTTCCATCACGGCCTTCCCCGTGCTCGCCCGCATCCTAACCGAGCTCAAGCTCCTCACCACGCGAGTGGGCTGCACCGCCATGGCCGCCGCCGCGTTCAACGACGTCGCGGCGTGGATCCTCCTCGCCCTCGCCATCGCGCTCGCCGGCGACGGCGTCAACAGCCACGTCCACAAGAGCCCCCTCGTCTCGCTATGGGTGCTCCTCTCCGGCGTGGCCTTCGTCGCCTTCATGATGATATTAGTCAAACCGGCGATGAGATTCGTCTCCGGAAAATGCTCTCCGGTGACCGGCGCGGTGGATGAAACCTACGTGTGCTTGACTCTGCTGCTCGTGATGGTGTTCGGGTTCGTGACGGACATGATTGGGATCCACTCGGTTTTCGGCGCGTTCGTGTTCGGAATAACGGTTCCGAAGGGCGCGTTTGCGGAGAGGCTGATAGAGAGGGTTGAGGATTTCGTTGTAGGGTTGTTGTTGCCGTTGTATTTTGCTTCGAGTGGGTTGAAGACGAACGTGGCTACGATAAGTGGCGCGAAGGGGTGGGGAATTTTGGCGCTGGTGATTGCGACGGCGTGCGCCGGGAAGATTGGGGGGACGTTTCTGACGGCGGTGGCGTGCAAGATTCCGATGAGGGAGGCGATGACGCTGGCGGTGCTCATGAACACTAAGGGATTGGTGGAGCTCATCGTCCTCAACATTGGGAAGGAAAAAAAGGTGTTAAACGATGAAATGTTTGCCATTTTGGTTCTTATGGCTCTATTCACCACCTTCATTACAACCCCAATAGTGTTGTCCATCTATAAAAACACTAATGACATATCCTTTCATCAAACCCTGAGAAAACTAGGTGACCTTGACACTAATGATAAAGCCACTAACGAGTTTCGCGTCTTGGCGTGTGTGCATGGCCCCAACAACGCTCCTTCCATCATTAACTTGATTGAGTCAATTCGTAGCATCCAAAAATCCTCCATCAAACTCTTCATCATGCACCTTGTTGAGCTCACAGAACGCTCTTCATCAATCATCTTGGCTCAGAACACTGATAATAAGAGTGGCTCTAGCCATGTTGAGTGGCTAGAGCAACTTTATAGGGCCTTCCAAGCCCATAGTCAATTGGGTCAAGTTTCAGTTCAGTCCAAGACCACTATCTCTTCGTTGTCCACTATGCATGATGACATTTGCCACGTGGCAGATGAGAAAATGGTGACCATGATCATCTTGCCTTTCCACAAGCGGTGGAAGAAGGTGGAAATGGAAAATGAGGAGGAGAACAGTGAGGTTTCCCAACACCAAATGGAGGAAAATATTGGCCATGGGTGGAGAGGTGTGAACCAAAGTGTACTTAGGAATGCACCTTGCACTGTGGCTGTGCTTGTTGATCGAGGATATGGACATGGGCCTCAGAATTTGGGCCTATATACCACTGTGACCCAACATGTTTGTGTTTTGTTCTTTGGTGGGCCCGACGATCGTGAGGCCTTGGAGTTGGGGGATAGAATATCTAACCATCCAGCGGTTAAAGTGACTGTTGTGAGGTTCATTCACAAAGATGTGTTGGAAGGTAACGACATGTCACACTCTTCACCAAGCAAAACTAATGGGAAAAGTTACAATTTAGCCATATCTAAAGTGTACCCTCCAAAGGAAAAGGAGCTAGATGATGCAACAATGGCAAGGTTCCAAAGAAAGTGGAATGGAATGGTAGAGTGTTTTGAGAAGGTAGCTAGTAATATTATGGAAGAGGTGTTAGCATTAGGGCGAAGTAAGGATTATGATCTCATAATTGTTGGGAAAGGTCAATTTTCGTTGAGTTTGGTGGCAGATTTGGTAGATAGGCAGCACGAGGAATTAGGTCCTATTGGAGACATTTTAGCATCATCAACGCATGATGTGGTTTCTTCAGTGTTAGTAATTCAACAACATAATGCGCTACTGAATGGGGAGACCCCTTTATCTATGAGAAATGACAATGTAATATAA

Predicted protein sequences of Glyma13g19370

Limit To All Plant Sequences

>Glyma13g19370.1   sequence type=predicted peptide   gene model=Glyma13g19370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALNITSIKTSSNGLWQGDNPLDFAFPLLILQITLIILLSRSLAFLLKPIRQPKVIAQIIAGIVLGPSVLGRNKTFKHRLFPPWSTPLLESLASIGLLFFLFLVGLELDLVTIRRSGKRALSIAVAGMSLPFVSGIGLALILRKTVDGTDRVGFAQFLVFMGVAISITAFPVLARILTELKLLTTRVGCTAMAAAAFNDVAAWILLALAIALAGDGVNSHVHKSPLVSLWVLLSGVAFVAFMMILVKPAMRFVSGKCSPVTGAVDETYVCLTLLLVMVFGFVTDMIGIHSVFGAFVFGITVPKGAFAERLIERVEDFVVGLLLPLYFASSGLKTNVATISGAKGWGILALVIATACAGKIGGTFLTAVACKIPMREAMTLAVLMNTKGLVELIVLNIGKEKKVLNDEMFAILVLMALFTTFITTPIVLSIYKNTNDISFHQTLRKLGDLDTNDKATNEFRVLACVHGPNNAPSIINLIESIRSIQKSSIKLFIMHLVELTERSSSIILAQNTDNKSGSSHVEWLEQLYRAFQAHSQLGQVSVQSKTTISSLSTMHDDICHVADEKMVTMIILPFHKRWKKVEMENEEENSEVSQHQMEENIGHGWRGVNQSVLRNAPCTVAVLVDRGYGHGPQNLGLYTTVTQHVCVLFFGGPDDREALELGDRISNHPAVKVTVVRFIHKDVLEGNDMSHSSPSKTNGKSYNLAISKVYPPKEKELDDATMARFQRKWNGMVECFEKVASNIMEEVLALGRSKDYDLIIVGKGQFSLSLVADLVDRQHEELGPIGDILASSTHDVVSSVLVIQQHNALLNGETPLSMRNDNVI*

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