Glyma13g19260 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g19260

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22827205
stop:	22830304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28820	AT	Annotation by Michelle Graham. TAIR10: HIT-type Zinc finger family protein \| chr4:14230815-14232287 REVERSE LENGTH=172	SoyBase	E_val: 5.00E-40	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2857	KOG	Predicted MYND Zn-finger protein/hormone receptor interactor	JGI		ISS
PTHR13241	Panther	THYROID RECEPTOR INTERACTING PROTEIN 3	JGI		ISS
PTHR13241:SF2	Panther	THYROID RECEPTOR INTERACTING PROTEIN 3	JGI		ISS
PF04438	PFAM	HIT zinc finger	JGI		ISS
UniRef100_D7MD81	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MD81_ARALL	SoyBase	E_val: 7.00E-37	ISS
UniRef100_I1LYT1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYT1_SOYBN	SoyBase	E_val: 2.00E-90	ISS

Expression Patterns of Glyma13g19260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19260

Paralog	Evidence	Comments
Glyma10g04900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g130200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g19260

Limit To All Plant Sequences

>Glyma13g19260.3   sequence type=transcript   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATATATAGAATGTATCATTATCTTTGGTAAGACAGTTAGCATGCAAAAGAGGGATCCAGATAAACAAATTATACCCTAAAGAGTTGCTAAACCCAAGCTGTGGGTTTTGCAGTTTCTTTGGGTTGAAGCACTTCCGTCTTCGAGTTGAGGCATTGAGCAGAGCAACGAAGCTCCTCCCAAACCAATGACTTTGGTCGACGGCGCTTCCTTCTGAATTTCCTAGACCCTTTTGGCTTCACGATGGGTCCTCGACAGTGCCAAGTCTGCAACCAAACTCAGTCCAAATACAAGTGCCCTTCATGTTACTTACCTTATTGTTCTCTGGTCTGTTTCAAGAAACACAAAGAATCTCCATGCGTCAAGCCACAGCCTTCAGAGACCAAAGCAACTGCTGTTTCAGAATCATTTGTAGAAAAGCCATTAGTTGCTGATGAATCAAGTGAGGTGTTGCAAAAATTCCAACTGGAGGCCATAGCCTCTTCCAGTGAGATTCGTGATGCTTTGAATGATGAAGCCCTTCAAGAACTAATTTGCCGTATTGATGGTTCCTCAAATGCAGAGAATGAGCTTGATAAAGCTATGGCAGAGGAGGCTTTTCGCTTGTTCACTGACAAGATTTTATCAACCATCAACCCCTAATTGCAAGCAATGGTTACTGAAACAAGAGTTTGTCGAATATGAAAGGAACAGCAGATAAGCCTCCAAATTTTTGTAGGATTTGGTTATTATTTCTTTTTCATCTGTACAGCTTTGCCCTGTGATTCAGCTTTTGATGTATGATAAATTTTGTATCTTCATTGAGGCATTGTATTGGTAACAATTGATTTTGATGCTCAGATAGTAAACCTCAAATCTGTGAAGTGTTTCCTTTGGCTCTCTTGATGAGAACTGAGAAGAAGTCTCGTTACATTTTTCATTTAACTGGATGAGAAGTCATACAGTGTGCGGATAACAGTTACGTAACTATTTTTCATTGTCTTGAAAAGTGAGAAAATCCCATTGAACGAGGGTTCATTGGGGAACCAAACACACTGGTGCAT

>Glyma13g19260.4   sequence type=transcript   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTATCATTATCTTTGGTAAGACAGTTAGCATGCAAAAGAGGGATCCAGATAAACAAATTATACCCTAAAGAGTTGCTAAACCCAAGCTGTGGGTTTTGCAGTTTCTTTGGGTTGAAGCACTTCCGTCTTCGAGTTGAGGCATTGAGCAGAGCAACGAAGCTCCTCCCAAACCAATGACTTTGGTCGACGGCGCTTCCTTCTGAATTTCCTTTTTTATATAAAAGAAGATTAAAGCGTAAGTGCTTCTGTTTCAGAGACCCTTTTGGCTTCACGATGGGTCCTCGACAGTGCCAAGTCTGCAACCAAACTCAGTCCAAATACAAGTGCCCTTCATGTTACTTACCTTATTGTTCTCTGGTCTGTTTCAAGAAACACAAAGAATCTCCATGCGTCAAGCCACAGCCTTCAGAGACCAAAGCAACTGCTGTTTCAGAATCATTTGTAGAAAAGCCATTAGTTGCTGATGAATCAAGTGAGGTGTTGCAAAAATTCCAACTGGAGGCCATAGCCTCTTCCAGTGAGATTCGTGATGCTTTGAATGATGAAGCCCTTCAAGAACTAATTTGCCGTATTGATGGTTCCTCAAATGCAGAGAATGAGCTTGATAAAGCTATGGCAGAGGAGGCTTTTCGCTTGTTCACTGACAAGATTTTATCAACCATCAACCCCTAATTGCAAGCAATGGTTACTGAAACAAGAGTTTGTCGAATATGAAAGGAACAGCAGATAAGCCTCCAAATTTTTGTAGGATTTGGTTATTATTTCTTTTTCATCTGTACAGCTTTGCCCTGTGATTCAGCTTTTGATGTATGATAAATTTTGTATCTTCATTGAGGCATTGTATTGGTAACAATTGATTTTGATGCTCAGATAGTAAACCTCAAATCTGTGAAGTGTTTCCTTTGGCTCTCTTGATGAGAACTGAGAAGAAGTCTCGTTACATTTTTCATTTAACTGGATGAGAAGTCATACAGTGTGCGGATAACAGTTACGTAACTATTTTTCATTGTCTTGAAAAGTGAGAAAATCCCATTGAACGAGGGTTCATTGGGGAACCAAACACACTGGTGCAT

Coding sequences of Glyma13g19260

Limit To All Plant Sequences

>Glyma13g19260.2   sequence type=CDS   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCTCGACAGTGCCAAGTCTGCAACCAAACTCAGTCCAAATACAAGTGCCCTTCATGTTACTTACCTTATTGTTCTCTGGTCTGTTTCAAGAAACACAAAGAATCTCCATGCGTCAAGCCACAGCCTTCAGAGACCAAAGCAACTGCTGTTTCAGAATCATTTGTAGAAAAGCCATTAGTTGCTGATGAATCAAGTGAGGTGTTGCAAAAATTCCAACTGGAGGCCATAGGTATCTTTTGTATGTATATAAGAATGCCCTACATGCAGGATCACAGTGTAGAGATTCCAGTGGTGGAACCATGA

>Glyma13g19260.3   sequence type=CDS   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCTCGACAGTGCCAAGTCTGCAACCAAACTCAGTCCAAATACAAGTGCCCTTCATGTTACTTACCTTATTGTTCTCTGGTCTGTTTCAAGAAACACAAAGAATCTCCATGCGTCAAGCCACAGCCTTCAGAGACCAAAGCAACTGCTGTTTCAGAATCATTTGTAGAAAAGCCATTAGTTGCTGATGAATCAAGTGAGGTGTTGCAAAAATTCCAACTGGAGGCCATAGCCTCTTCCAGTGAGATTCGTGATGCTTTGAATGATGAAGCCCTTCAAGAACTAATTTGCCGTATTGATGGTTCCTCAAATGCAGAGAATGAGCTTGATAAAGCTATGGCAGAGGAGGCTTTTCGCTTGTTCACTGACAAGATTTTATCAACCATCAACCCCTAA

>Glyma13g19260.4   sequence type=CDS   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCCTCGACAGTGCCAAGTCTGCAACCAAACTCAGTCCAAATACAAGTGCCCTTCATGTTACTTACCTTATTGTTCTCTGGTCTGTTTCAAGAAACACAAAGAATCTCCATGCGTCAAGCCACAGCCTTCAGAGACCAAAGCAACTGCTGTTTCAGAATCATTTGTAGAAAAGCCATTAGTTGCTGATGAATCAAGTGAGGTGTTGCAAAAATTCCAACTGGAGGCCATAGCCTCTTCCAGTGAGATTCGTGATGCTTTGAATGATGAAGCCCTTCAAGAACTAATTTGCCGTATTGATGGTTCCTCAAATGCAGAGAATGAGCTTGATAAAGCTATGGCAGAGGAGGCTTTTCGCTTGTTCACTGACAAGATTTTATCAACCATCAACCCCTAA

Predicted protein sequences of Glyma13g19260

Limit To All Plant Sequences

>Glyma13g19260.2   sequence type=predicted peptide   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPCVKPQPSETKATAVSESFVEKPLVADESSEVLQKFQLEAIGIFCMYIRMPYMQDHSVEIPVVEP*

>Glyma13g19260.3   sequence type=predicted peptide   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPCVKPQPSETKATAVSESFVEKPLVADESSEVLQKFQLEAIASSSEIRDALNDEALQELICRIDGSSNAENELDKAMAEEAFRLFTDKILSTINP*

>Glyma13g19260.4   sequence type=predicted peptide   gene model=Glyma13g19260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPCVKPQPSETKATAVSESFVEKPLVADESSEVLQKFQLEAIASSSEIRDALNDEALQELICRIDGSSNAENELDKAMAEEAFRLFTDKILSTINP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain