SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20230 | AT | Annotation by Michelle Graham. TAIR10: Tetraspanin family protein | chr2:8725762-8727388 FORWARD LENGTH=270 | SoyBase | E_val: 1.00E-78 | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF69 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_I1LYS6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYS6_SOYBN | SoyBase | E_val: 5.00E-178 | ISS |
| UniRef100_Q93XY5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Arabidopsis thaliana RepID=Q93XY5_ARATH | SoyBase | E_val: 5.00E-76 | ISS |
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Glyma13g19210 not represented in the dataset |
Glyma13g19210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g04820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g129800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19210.1 sequence type=CDS gene model=Glyma13g19210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGCTGAATTTGTGCCACGTTTCGCTTGGTTTCGTTCTGAAATTCCTGAATTTTCTTCAATGCTTCGTTGGCCTTTCCATTCTGCTCTATTCCCTATGGATGTTCAACGAATGGGACCATCGTGTCCCTCCCGATCCTCCTCTTCCTCCTGCCTTCCATTTCTATCTCAAATTCAATTCCATCAACCTACCCGCTCCTTGGTTCATCTACGATTTCATGGGATTGGGAATATTGGTGTTATGCATTTCTTTCTTGGGTTGCATTGCAGCTGAAATGATTAATGGCTGCTGCTTGTGTTTTTACACTATACTCGTGGCAGTGCTTCTTCTTCTGGAAGCTTCTCTGGTGGGATTCATTGCACTTGATAGTGATTGGGAAAAGGATATTCCACTCGATCCAACCGGTCAACTTGACGAGCTTCGAGCTTTCATTGAAGATAATATAGATATCTGCACATGGGTTGGCATTGCTGTGCTTGTGGTTCAGGCATTATCTCTACTACTGGCATTAATTTTGCGAGCCACAGTTTCTGCTAGGAGAGCAGATTTTGATTATGAAGATGGATATGATGTTAGGGGTAGAAGTTGGGAGCCCCTACTGAATCCTCAACCTGGCCAACCATCTGGGTCTAGCAAAGGTGATAATAGTGGAAATCACTCTGATTTTTGGAGCTCGCGGATGAGACAGAAGTACGGGCTGAACCATGGTGGTGATAAGTACAGCTACCAACCATGA
>Glyma13g19210.1 sequence type=predicted peptide gene model=Glyma13g19210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLNLCHVSLGFVLKFLNFLQCFVGLSILLYSLWMFNEWDHRVPPDPPLPPAFHFYLKFNSINLPAPWFIYDFMGLGILVLCISFLGCIAAEMINGCCLCFYTILVAVLLLLEASLVGFIALDSDWEKDIPLDPTGQLDELRAFIEDNIDICTWVGIAVLVVQALSLLLALILRATVSARRADFDYEDGYDVRGRSWEPLLNPQPGQPSGSSKGDNSGNHSDFWSSRMRQKYGLNHGGDKYSYQP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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