Glyma13g19200 - SoyBase

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Report for Sequence Feature Glyma13g19200

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22761936
stop:	22766738
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28760	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3741) \| chr4:14208640-14211811 FORWARD LENGTH=924	SoyBase	E_val: 3.00E-141	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21726	Panther	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED	JGI		ISS
PTHR21726:SF7	Panther	gb def: Hypothetical protein At4g28760	JGI		ISS
PF12552	PFAM	Protein of unknown function (DUF3741)	JGI		ISS
UniRef100_B9DGX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT4G28760 protein n=2 Tax=Arabidopsis thaliana RepID=B9DGX8_ARATH	SoyBase	E_val: 2.00E-138	ISS
UniRef100_UPI000233CBFB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CBFB related cluster n=1 Tax=unknown RepID=UPI000233CBFB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19200

Paralog	Evidence	Comments
Glyma10g04810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g129700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19200

Limit To All Plant Sequences

>Glyma13g19200.2   sequence type=CDS   gene model=Glyma13g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGCTCATAGACAAAGAGATGTCCAAAAAAAAAGACTCCAAGCACACCCTACCAAATGTAGTAGCAAAACTAATGGGGCTTGAGGCCCTTCCAAGGGGAGAGCCTCATTTATCTATGGAAAGAAGCCACAGAAGAGACTATTCTCAACAAATGTATGGTCCTGTAGGCTTACCATTCAAGCATTGGCAACAGGAAGATAGGTTTATGGATAGGGAAATGCTTCATGAAGTTCATCCAAGCACAGAACAGGTTGCTTACAAAGATATGTATGAAATATGGCAGCAATCTCAGAGAGCAAGCCATGACAGAGGAAAGTGGAGTGAAGATGTTGATGAGAAAAGAATGGCTCTGATTCGACAGAAATTCATGGAAGCAAAACGTCTGTCAACCGATGAGAGACTGCACCAATCTGAACAATTTAAAGATGCCTTGGAAGTTTTAAGCTCCAATAGTGATCTCTTGATCAGGTTATTGGATTCTCAAAATGTTTCTGATTTATACTCAACTTCACCTAATGAGACAAAGCGCATTACTCTTATTAAACCTTTGAAGATGGTTGACAACGACAAATCTGCCAGAAAGGAGAAAACGAATAATAGACCGATTAAGAAACCATCTAGTGTTGATCAAGCAAATCCTGGAAACTCTCCAGATAGTCAGAAAGTTGATGAATCTCCGGTCCGAACCACTCGAATAGTGTTACTAAAGCCAAGCCCAGGGAGGACACCTGAGCAAAAGGCTGTTGTTTCTCCAACAACTTCGCTGAATCTGAAAAGCAGAAATTTCCATCATGGACCTGAATATGATGATGTACTAGAATCCATTAGAGTGGCAAATGAGATCACACAGCAAATGCATAAAGGCCCGAGGAGCTATCAAAAGGATAAAACTCTGTATTCCTCAGTGTTTTCCAATGGCTATTCTGATGATGAGAGTTCATTCAACAAATCATATCATGAGTATGCATCTGCGAATTTCAGTGATTTTGAAGCTACGTCAATGTCACCATTGCCAAGGCTTTCGTGGGATTACAATTACATCAATGGCTATGGCAGCCCTTATTCTAGAATGTCCTTGGGCCGTGTGCCATGCTCTCCCGAGTCATCGGTGTGCAGAGAGGCAAAGAAAAGACTTTCTGAAAGATGGACTATGATGACATCAGATAATAAGGGTCATCAAGAACAAAGGCAAGCAAGGAAAAGCTCTACCTTGGGTGAGATGCTTTCTCTTACCCACAAAAAGAAATCTGTAACATCTGAGGTTGAGAGTATCAATGAGGACCAAGAACCTGGCAAATCTGTTTCTTGTAGTCATTCTTTCAATGCAGAAATAAGCATTGAGGGTTCTCCTAAAAATCTCCCCAGGTCAAATTCTGTGCCTGCATCTTCTACTGTATATGAAAATGGCCTCACAGTTAAAGTAAATGATCATAAGAATACTGGCAAAGCACAAGGCTCCAAGGAGCAGAAAAAGCCTAAGAGTATGAGATCATCTTTTAAAGGGAAAGTTGCTACTTTCTTGTTCTCAAGGAGTAAGAAATCAACCAAGGAAAAACCAAGTTCATCTCAATCTAAAGATGCATCCCAATCTACTTCCACTGTCACTGCAACATTAGTTCTTCCAGCAAATTCACCTGGAGTCCTTAGGGGTGATGTGTCTCAAAGCATCAATGTGGATGGTTTTGAAGAGTGTTCTCTTGCAGCGCTATGTGAATCATCAGGGAAAAATTCAACAGATTCAGTCTCTAACGGACATGAAGAAGACATGATTACACTAGAGCCTGGATTGACTATGCCAAGGCCCATGGTGCCAGAGATTCATTCAAGCGAAAACCCAGATCAGCCAAGTCCAATCTCAGTGTTACAACCTCCATTTGAAGATTATAATAATAATAATGCATCACATGAGTCCTTGAACTGTATGAAGAGTGGTGACCAGGGGTCACAGGTGCCACTGAAGTCCAATTTAATTGACAAATCACCACCTATAGAATCAATAGCTAGGACCCTATCATGGGATGGTTCTAGTGCAGAAGTGGCAAGTTCCTATGCATTAAAACCCTTAATGGTTTCTTCCTTGGACTCCAAGGTAGAGGATCAAGAGTGGCTTCTCTTGGTCCACAAACTACTATCAGCAGCTGGACTTGATGATCAACACCAACATGACTCATCTTACACTAGATGGCATTCCCTTGAGAGCCCATTGGACCCATCACTGAGGGACGCATTATACGCCAATCTAAATGAGAAGGAGCCTCAGCCAATTATGCATGAGCGCAGAAGAAGGAAGATGAGATCAAACCACAAACTTGTGTTTGACTATGTCAATGCTGCACTATTGGAACTTGTTGGTTATGGGTCAGAAAAGTGCTTAAAGAGAAGTAAGAGCCACTACAGGGTCCAAGTCCAAGAGGGTGCATCAGCAGCAGCATCTCCCTTATTGGTGGACCACATTGTGGCCCAAATGAAGGAATTAATAGCAAGTGGGGTGAGGTGTGAGTGGGAAAATGGTGGGGCCAGCACCAGCCTGGTGGTAGAAAATGTTGTCAGAAAAGAGGTTGTGCAAATAGGGTGGGTTGAGCTTATGGAATTGGAGATTGATATTTTGGGGAAGGAGATTGAAGGGGACTTGATTCAAGAGCTTGTGGAGAATGCAGTGGTTGATTTGACAGGCAGGGCCTCTGAGTCCCTCTCTTGA

Predicted protein sequences of Glyma13g19200

Limit To All Plant Sequences

>Glyma13g19200.2   sequence type=predicted peptide   gene model=Glyma13g19200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMLIDKEMSKKKDSKHTLPNVVAKLMGLEALPRGEPHLSMERSHRRDYSQQMYGPVGLPFKHWQQEDRFMDREMLHEVHPSTEQVAYKDMYEIWQQSQRASHDRGKWSEDVDEKRMALIRQKFMEAKRLSTDERLHQSEQFKDALEVLSSNSDLLIRLLDSQNVSDLYSTSPNETKRITLIKPLKMVDNDKSARKEKTNNRPIKKPSSVDQANPGNSPDSQKVDESPVRTTRIVLLKPSPGRTPEQKAVVSPTTSLNLKSRNFHHGPEYDDVLESIRVANEITQQMHKGPRSYQKDKTLYSSVFSNGYSDDESSFNKSYHEYASANFSDFEATSMSPLPRLSWDYNYINGYGSPYSRMSLGRVPCSPESSVCREAKKRLSERWTMMTSDNKGHQEQRQARKSSTLGEMLSLTHKKKSVTSEVESINEDQEPGKSVSCSHSFNAEISIEGSPKNLPRSNSVPASSTVYENGLTVKVNDHKNTGKAQGSKEQKKPKSMRSSFKGKVATFLFSRSKKSTKEKPSSSQSKDASQSTSTVTATLVLPANSPGVLRGDVSQSINVDGFEECSLAALCESSGKNSTDSVSNGHEEDMITLEPGLTMPRPMVPEIHSSENPDQPSPISVLQPPFEDYNNNNASHESLNCMKSGDQGSQVPLKSNLIDKSPPIESIARTLSWDGSSAEVASSYALKPLMVSSLDSKVEDQEWLLLVHKLLSAAGLDDQHQHDSSYTRWHSLESPLDPSLRDALYANLNEKEPQPIMHERRRRKMRSNHKLVFDYVNAALLELVGYGSEKCLKRSKSHYRVQVQEGASAAASPLLVDHIVAQMKELIASGVRCEWENGGASTSLVVENVVRKEVVQIGWVELMELEIDILGKEIEGDLIQELVENAVVDLTGRASESLS*

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