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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28740 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant | SoyBase | E_val: 5.00E-137 | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF11998 | PFAM | Protein of unknown function (DUF3493) | JGI | ISS | |
| UniRef100_I1LYR9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYR9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94AF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g28740/F16A16_150 n=1 Tax=Arabidopsis thaliana RepID=Q94AF3_ARATH | SoyBase | E_val: 2.00E-132 | ISS |
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Glyma13g19160 not represented in the dataset |
Glyma13g19160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g129300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19160.3 sequence type=transcript gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAGAATCATCCAAATAAGGAGATGAATGGCCTCAGAATTTAGTTGAGTTCAGTTGCAGACCTTCACATGGCAAAATCATTCTTCACTTAGTTAGGAACCGAACCATGGCTATAACGTTCGGTTTAGTGACTCCTAACTCCAACACTTTGTGTCTCACTCTCACCACACCACCCCTCATCGCCAATCATCGTACTACTAATGTTGTGTTCTCTGGTCAAAGTGTCTTCAGCTATGGACACACTAATCTTTCTTATTCACACCAAAGGGCTTCTTCCTTTGCCACTATTGTCTGTTCTGCTGCTAATAAACCATCCTCTTCTTCTGAAATTAGGTTCTATTAGCCAGTGATGCTTCATCAATCATTAATCATATTTGTTCTTCAGCTCTACAGCCAAGATAAGGAGCGAGGTTCTCTCTCCCTTTCGTTCAGTTAGGATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTGCTCTTGGGGGATTCATAGCAACCACACAACTAATTGGTGCACTGGCTAACTCATCAAGAGCATCTGAAGTCCCTGAGATTCTGAAGGGCCTTGGCATCGACCTTGCAGCAGTGTCTTTATTTGCTTTCTTGTATTTCAGAGAGAACAAAGCAAAGAATGCACAAGTGGCTCGCCTATCAAGAGAGGAAAGCTTATCAAATCTTAAGCTCCGTGTGGATGAGAAGAAGATCATTCCTGTGAACTCATTGAGAGGGATTGCTCGACTTGTCATCTGTGCTGGCCCTGCATCCTTTGTAACCGAGTCTTTTAAGCGCAGTGAGCCTTTCACCGATAGTCTTTTGGATAGAGGGGTGCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACCTGCTTTGGAGTTTGAGGAGACTGAGGAACTTGCCACTAGAAGGAAGAGACTCTGGCAACTGGCTCCAGTTTACATCAATGAGTGGTCTGAGTGGTTAGATGAGCAAAAGAAGTTAGCTGGTGTACCTTCTGATTCTCCAGTGTACCTATCCCTACGCTTGGATGGTCGTGTTCGTGGCAGTGGTGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACAGGTAAAGGGAATGTGGACTGGCCTACTAGATGGCTTTGATGGTAGAGTTTAGAAGAGCAAGTGTTTTTTTCTACTTCTGAAGGTTGAACTCTCATACTTACCCCCTCCCCCACAAAACAAAAAGTTCTTCAGCCCGTTTTCTTCATATTCTCTTTCTGGTTTTGTTTCTAATAGTGGAGATTCCATTAAACTTTTATGATTTGATTTTAATTGTATTTATTATTTATTATTTATTTTATTTTATTTTTGCTTTGATCTTCTTGCTAACATGTTTAGATATGCTTTAGTGGCTCTAGGTCAAATGAGGACTATTTATATTTTGGGCAAATTACGCTCTCAAGCCTTAAGGTTTAATTAAATTATTACACTTGATATCCTTTTACTTTACTTTGACCTTCCAACTTCCAAGATCTATAAAACTGTAAGAAATCAAGGGAAGTCCGTGTTATTGGAAAGGATTATGTTGTTCTATAAATTAAAGGAAGTTTGTGTAATTGTGTAGGATTAAAAAGGAAAGGAAAGTGAAATTTTGTTAAACTTCAAGGAGGTGCAAGTGTAATTTGTCCTTATATTTTCCATTTTTTAAAGATAACTGATTGTTTTGCATTAGAATCTGTATTGATCCCTTCTTGACGATTGTCATTTAGTAATATTAGCTTTTGTATGATTGTAGTAAGTGACAAGTTGTGTAATGATTGACTGTAATATATACCTAATACACCAAAAGGCATGAATTGT >Glyma13g19160.4 sequence type=transcript gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCAACAAAGAAGATAGGAAGAAAAAAGAGAGAAGTGTGTGATGAGGTTGTTGGTATGTTAGAAAGAAAGAACAGAAGTAAAATAATGTTGCAGAAAGTATTATAGAAATGTGTTGTAGAAATAATGTAACCCTCTTCCGAATGGTGTTTGTTATATTAAAGTATATTCTATTTCTAATTTAATTGTAATCAGGATGTAGAGTTGAGATGCATGACATGATCATACATACGTACATATGCATAGTACAGGTAGCATTAGCATAAGAGGAAAATGTAGCTATCAATTGATCATTACTCATTAGAATTGATGCCGAGAGTGGCATTGAATGGCCACAAACAAACATGTAATTTTAGTTTTAAGTTCATAATTTCACATGTTGATCATATATTTGGAATTCCTGGTACCCCTTTTCAGTTTTCATGACAGTGTGACACGAAGCCTGAAAAAGAAAAGAATAGGATCAAATGAGTATGGTTTGCATTGGAATTAGGTTTTATATGGAGTGTTTATGAGGAACATTCCACGATGAAAGGTTCTATTAGCCAGTGATGCTTCATCAATCATTAATCATATTTGTTCTTCAGCTCTACAGCCAAGATAAGGAGCGAGGTTCTCTCTCCCTTTCGTTCAGTTAGGATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTGCTCTTGGGGGATTCATAGCAACCACACAACTAATTGGTGCACTGGCTAACTCATCAAGAGCATCTGAAGTCCCTGAGATTCTGAAGGGCCTTGGCATCGACCTTGCAGCAGTGTCTTTATTTGCTTTCTTGTATTTCAGAGAGAACAAAGCAAAGAATGCACAAGTGGCTCGCCTATCAAGAGAGGAAAGCTTATCAAATCTTAAGCTCCGTGTGGATGAGAAGAAGATCATTCCTGTGAACTCATTGAGAGGGATTGCTCGACTTGTCATCTGTGCTGGCCCTGCATCCTTTGTAACCGAGTCTTTTAAGCGCAGTGAGCCTTTCACCGATAGTCTTTTGGATAGAGGGGTGCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACCTGCTTTGGAGTTTGAGGAGACTGAGGAACTTGCCACTAGAAGGAAGAGACTCTGGCAACTGGCTCCAGTTTACATCAATGAGTGGTCTGAGTGGTTAGATGAGCAAAAGAAGTTAGCTGGTGTACCTTCTGATTCTCCAGTGTACCTATCCCTACGCTTGGATGGTCGTGTTCGTGGCAGTGGTGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACAGGTAAAGGGAATGTGGACTGGCCTACTAGATGGCTTTGATGGTAGAGTTTAGAAGAGCAAGTGTTTTTTTCTACTTCTGAAGGTTGAACTCTCATACTTACCCCCTCCCCCACAAAACAAAAAGTTCTTCAGCCCGTTTTCTTCATATTCTCTTTCTGGTTTTGTTTCTAATAGTGGAGATTCCATTAAACTTTTATGATTTGATTTTAATTGTATTTATTATTTATTATTTATTTTATTTTATTTTTGCTTTGATCTTCTTGCTAACATGTTTAGATATGCTTTAGTGGCTCTAGGTCAAATGAGGACTATTTATATTTTGGGCAAATTACGCTCTCAAGCCTTAAGGTTTAATTAAATTATTACACTTGATATCCTTTTACTTTACTTTGACCTTCCAACTTCCAAGATCTATAAAACTGTAAGAAATCAAGGGAAGTCCGTGTTATTGGAAAGGATTATGTTGTTCTATAAATTAAAGGAAGTTTGTGTAATTGTGTAGGATTAAAAAGGAAAGGAAAGTGAAATTTTGTTAAACTTCAAGGAGGTGCAAGTGTAATTTGTCCTTATATTTTCCATTTTTTAAAGATAACTGATTGTTTTGCATTAGAATCTGTATTGATCCCTTCTTGACGATTGTCATTTAGTAATATTAGCTTTTGTATGATTGTAGTAAGTGACAAGTTGTGTAATGATTGACTGTAATATATACCTAATACACCAAAAGGCATGAATTGT
>Glyma13g19160.1 sequence type=CDS gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATAACGTTCGGTTTAGTGACTCCTAACTCCAACACTTTGTGTCTCACTCTCACCACACCACCCCTCATCGCCAATCATCGTACTACTAATGTTGTGTTCTCTGGTCAAAGTGTCTTCAGCTATGGACACACTAATCTTTCTTATTCACACCAAAGGGCTTCTTCCTTTGCCACTATTGTCTGTTCTGCTGCTAATAAACCATCCTCTTCTTCTGAAATTAGCTCTACAGCCAAGATAAGGAGCGAGGTTCTCTCTCCCTTTCGTTCAGTTAGGATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTGCTCTTGGGGGATTCATAGCAACCACACAACTAATTGGTGCACTGGCTAACTCATCAAGAGCATCTGAAGTCCCTGAGATTCTGAAGGGCCTTGGCATCGACCTTGCAGCAGTGTCTTTATTTGCTTTCTTGTATTTCAGAGAGAACAAAGCAAAGAATGCACAAGTGGCTCGCCTATCAAGAGAGGAAAGCTTATCAAATCTTAAGCTCCGTGTGGATGAGAAGAAGATCATTCCTGTGAACTCATTGAGAGGGATTGCTCGACTTGTCATCTGTGCTGGCCCTGCATCCTTTGTAACCGAGTCTTTTAAGCGCAGTGAGCCTTTCACCGATAGTCTTTTGGATAGAGGGGTGCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACCTGCTTTGGAGTTTGAGGAGACTGAGGAACTTGCCACTAGAAGGAAGAGACTCTGGCAACTGGCTCCAGTTTACATCAATGAGTGGTCTGAGTGGTTAGATGAGCAAAAGAAGTTAGCTGGTGTACCTTCTGATTCTCCAGTGTACCTATCCCTACGCTTGGATGGTCGTGTTCGTGGCAGTGGTGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACAGGTAAAGGGAATGTGGACTGGCCTACTAGATGGCTTTGATGGTAGAGTTTAG >Glyma13g19160.3 sequence type=CDS gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTGCTCTTGGGGGATTCATAGCAACCACACAACTAATTGGTGCACTGGCTAACTCATCAAGAGCATCTGAAGTCCCTGAGATTCTGAAGGGCCTTGGCATCGACCTTGCAGCAGTGTCTTTATTTGCTTTCTTGTATTTCAGAGAGAACAAAGCAAAGAATGCACAAGTGGCTCGCCTATCAAGAGAGGAAAGCTTATCAAATCTTAAGCTCCGTGTGGATGAGAAGAAGATCATTCCTGTGAACTCATTGAGAGGGATTGCTCGACTTGTCATCTGTGCTGGCCCTGCATCCTTTGTAACCGAGTCTTTTAAGCGCAGTGAGCCTTTCACCGATAGTCTTTTGGATAGAGGGGTGCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACCTGCTTTGGAGTTTGAGGAGACTGAGGAACTTGCCACTAGAAGGAAGAGACTCTGGCAACTGGCTCCAGTTTACATCAATGAGTGGTCTGAGTGGTTAGATGAGCAAAAGAAGTTAGCTGGTGTACCTTCTGATTCTCCAGTGTACCTATCCCTACGCTTGGATGGTCGTGTTCGTGGCAGTGGTGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACAGGTAAAGGGAATGTGGACTGGCCTACTAGATGGCTTTGATGGTAGAGTTTAG >Glyma13g19160.4 sequence type=CDS gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTTTTATATTGCTTTTGTTGCAAGTGGTGCTCTTGGGGGATTCATAGCAACCACACAACTAATTGGTGCACTGGCTAACTCATCAAGAGCATCTGAAGTCCCTGAGATTCTGAAGGGCCTTGGCATCGACCTTGCAGCAGTGTCTTTATTTGCTTTCTTGTATTTCAGAGAGAACAAAGCAAAGAATGCACAAGTGGCTCGCCTATCAAGAGAGGAAAGCTTATCAAATCTTAAGCTCCGTGTGGATGAGAAGAAGATCATTCCTGTGAACTCATTGAGAGGGATTGCTCGACTTGTCATCTGTGCTGGCCCTGCATCCTTTGTAACCGAGTCTTTTAAGCGCAGTGAGCCTTTCACCGATAGTCTTTTGGATAGAGGGGTGCTTGTTGTGCCCTTTGTAACAGATGGAAATTCACCTGCTTTGGAGTTTGAGGAGACTGAGGAACTTGCCACTAGAAGGAAGAGACTCTGGCAACTGGCTCCAGTTTACATCAATGAGTGGTCTGAGTGGTTAGATGAGCAAAAGAAGTTAGCTGGTGTACCTTCTGATTCTCCAGTGTACCTATCCCTACGCTTGGATGGTCGTGTTCGTGGCAGTGGTGTTGGTTATCCTCCTTGGAATGCTTTGGTTGCACAATTACCACAGGTAAAGGGAATGTGGACTGGCCTACTAGATGGCTTTGATGGTAGAGTTTAG
>Glyma13g19160.1 sequence type=predicted peptide gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAITFGLVTPNSNTLCLTLTTPPLIANHRTTNVVFSGQSVFSYGHTNLSYSHQRASSFATIVCSAANKPSSSSEISSTAKIRSEVLSPFRSVRMFFYIAFVASGALGGFIATTQLIGALANSSRASEVPEILKGLGIDLAAVSLFAFLYFRENKAKNAQVARLSREESLSNLKLRVDEKKIIPVNSLRGIARLVICAGPASFVTESFKRSEPFTDSLLDRGVLVVPFVTDGNSPALEFEETEELATRRKRLWQLAPVYINEWSEWLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDGRV* >Glyma13g19160.3 sequence type=predicted peptide gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFYIAFVASGALGGFIATTQLIGALANSSRASEVPEILKGLGIDLAAVSLFAFLYFRENKAKNAQVARLSREESLSNLKLRVDEKKIIPVNSLRGIARLVICAGPASFVTESFKRSEPFTDSLLDRGVLVVPFVTDGNSPALEFEETEELATRRKRLWQLAPVYINEWSEWLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDGRV* >Glyma13g19160.4 sequence type=predicted peptide gene model=Glyma13g19160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFFYIAFVASGALGGFIATTQLIGALANSSRASEVPEILKGLGIDLAAVSLFAFLYFRENKAKNAQVARLSREESLSNLKLRVDEKKIIPVNSLRGIARLVICAGPASFVTESFKRSEPFTDSLLDRGVLVVPFVTDGNSPALEFEETEELATRRKRLWQLAPVYINEWSEWLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDGRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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