SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G29420 | AT | Annotation by Michelle Graham. TAIR10: glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227 | SoyBase | E_val: 3.00E-52 | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004364 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity | SoyBase | N/A | ISS |
| KOG0406 | KOG | Glutathione S-transferase | JGI | ISS | |
| PTHR11260 | Panther | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | JGI | ISS | |
| PTHR11260:SF16 | Panther | GLUTATHIONE S-TRANSFERASE THETA | JGI | ISS | |
| PF00043 | PFAM | Glutathione S-transferase, C-terminal domain | JGI | ISS | |
| PF02798 | PFAM | Glutathione S-transferase, N-terminal domain | JGI | ISS | |
| UniRef100_B9SH83 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutathione s-transferase, putative n=1 Tax=Ricinus communis RepID=B9SH83_RICCO | SoyBase | E_val: 1.00E-77 | ISS |
| UniRef100_I1LYR6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYR6_SOYBN | SoyBase | E_val: 4.00E-158 | ISS |
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Glyma13g19130 not represented in the dataset |
Glyma13g19130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g129000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g19130.3 sequence type=transcript gene model=Glyma13g19130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAGTATAAAAAATAAAACTAAAGACCATGTATGAATGGTCAATCTTGGCAGCCTTACACACGACCAAATCATGGCTTCCTCTTTCTCACAACCAATTCATCCACTTTGAGATCAGAATTGGATCGGACTACCCTCACTCGGTTGATACTCTGCATTAACGATTAAACTGTAAGTCAATATTTTTGTAAAAGATTTTATCGATGATATTTTGAAGTTTGGACTTGATTAGCCTGCTAAACAAAATATCCAATATTGAAATTCGATGCCATATTATAAGATGATATCAAGTTTGACAGCTTCTCTTGCTATGTCGGGAAAAGATCTTTGACTTGGTCATAAGTTGAAGAACCGCACCTGCACCATACAATGGGAGAAGTGAAGCTACTGGGAGTTTGGCCTAGTGGATTCGTTTACAGGATCATATGGGCTTTAGAGCTGAAGGGCGTAAAATATGAGTATATACAAGGAGAATTCAACAAGCCTGATTTCTCTGATTTGCTGTTGAAGTATAACCCAGTTTACAAAAAGGTTCCAGTTCTTGTTCTTGAAGGAAAGCCAATCGCTGAATCCATGGTTATTCTTGAATACATAGAGGAAACATGGCCACAGCCACACTTGCTTCCACAGGACCCGTATGAGAGGGCCGTGGCAAGGTTCTGGGTTAGTTTTGCAGAGGAAAAGAGCGTTTCTTTTATGTCATTCTTTGTGAGTGTTGGAGAAGAGTTTCAGAAGGCAAGAAAGGAAGTCAGAGAAGTGCTCAAAGTATTAGAAGAAACCATTGGGGACAAGAAGTATTTTGGTGGTGAAGAAATTGGACTGTTAGACATAAACTTGGGATGGATAGCCTTGTTTTTTGGAGTCATTGAAGATGTTGTTGGTATTAAAGTTTTAGTTGTGGATGATTTCCCTCGCTTGTTTACTTGGATTCAGAACTTCAGGGAGCACCCCGCTATCAAGACAAACTTCCCAAGTCACCAAGAGTTGTTTGATTATTACAAGCAGAAGAGGGAGACCATGGTTCCATCCCAGATAGCATGAATGCTGGCTAGAACTGATATGTTATCTGTACGATATACTCCTTTACATTTAGTAAAATTCCTTGTGCTAGGATAATTGGATTGGATAATGTTCTTGTTTCAATGATGCTACTTCACATGTCAACCATCATTCAATCTGCAGAATGTGTTCACAATAATTTGCGTTTTAATTGTGTTCAGTTCTTTGGACAGTTGAATTAATATCACCTTAACTTTCAATTTAAATTTACAAGCTAGAGATAGATGGCGG
>Glyma13g19130.2 sequence type=CDS gene model=Glyma13g19130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGTGAAGCTACTGGGAGTTTGGCCTAGTGGATTCGTTTACAGGATCATATGGGCTTTAGAGCTGAAGGGCGTAAAATATGAGTATATACAAGGAGAATTCAACAAGCCTGATTTCTCTGATTTGCTGTTGAAGTATAACCCAGTTTACAAAAAGGTTCCAGTTCTTGTTCTTGAAGGAAAGCCAATCGCTGAATCCATGGTTATTCTTGAATACATAGAGGAAACATGGCCACAGCCACACTTGCTTCCACAGGACCCGTATGAGAGGGCCGTGGCAAGGTTCTGGGTTAGTTTTGCAGAGGAAAAGAGCGTTTCTTTTATGTCATTCTTTGTGAGTGTTGGAGAAGAGTTTCAGAAGGCAAGAAAGGAAGTCAGAGAAGTGCTCAAAGTATTAGAAGAAACCATTGGGGACAAGAAGTATTTTGGTGGTGAAGAAATTGGACTGTTAGACATAAACTTGGGATGGATAGCCTTGTTTTTTGGAGTCATTGAAGATGTTGTTGGTATTAAAGTTTTAGTTGTGGATGATTTCCCTCGCTTGTTTACTTGGATTCAGAACTTCAGGGAGCACCCCGCTATCAAGACAAACTTCCCAAGTCACCAAGAGTTGTTTGATTATTACAAGCAGAAGAGGGAGACCATGGTTCCATCCCAGATAGCATGA >Glyma13g19130.3 sequence type=CDS gene model=Glyma13g19130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAGTGAAGCTACTGGGAGTTTGGCCTAGTGGATTCGTTTACAGGATCATATGGGCTTTAGAGCTGAAGGGCGTAAAATATGAGTATATACAAGGAGAATTCAACAAGCCTGATTTCTCTGATTTGCTGTTGAAGTATAACCCAGTTTACAAAAAGGTTCCAGTTCTTGTTCTTGAAGGAAAGCCAATCGCTGAATCCATGGTTATTCTTGAATACATAGAGGAAACATGGCCACAGCCACACTTGCTTCCACAGGACCCGTATGAGAGGGCCGTGGCAAGGTTCTGGGTTAGTTTTGCAGAGGAAAAGAGCGTTTCTTTTATGTCATTCTTTGTGAGTGTTGGAGAAGAGTTTCAGAAGGCAAGAAAGGAAGTCAGAGAAGTGCTCAAAGTATTAGAAGAAACCATTGGGGACAAGAAGTATTTTGGTGGTGAAGAAATTGGACTGTTAGACATAAACTTGGGATGGATAGCCTTGTTTTTTGGAGTCATTGAAGATGTTGTTGGTATTAAAGTTTTAGTTGTGGATGATTTCCCTCGCTTGTTTACTTGGATTCAGAACTTCAGGGAGCACCCCGCTATCAAGACAAACTTCCCAAGTCACCAAGAGTTGTTTGATTATTACAAGCAGAAGAGGGAGACCATGGTTCCATCCCAGATAGCATGA
>Glyma13g19130.2 sequence type=predicted peptide gene model=Glyma13g19130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEVKLLGVWPSGFVYRIIWALELKGVKYEYIQGEFNKPDFSDLLLKYNPVYKKVPVLVLEGKPIAESMVILEYIEETWPQPHLLPQDPYERAVARFWVSFAEEKSVSFMSFFVSVGEEFQKARKEVREVLKVLEETIGDKKYFGGEEIGLLDINLGWIALFFGVIEDVVGIKVLVVDDFPRLFTWIQNFREHPAIKTNFPSHQELFDYYKQKRETMVPSQIA* >Glyma13g19130.3 sequence type=predicted peptide gene model=Glyma13g19130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEVKLLGVWPSGFVYRIIWALELKGVKYEYIQGEFNKPDFSDLLLKYNPVYKKVPVLVLEGKPIAESMVILEYIEETWPQPHLLPQDPYERAVARFWVSFAEEKSVSFMSFFVSVGEEFQKARKEVREVLKVLEETIGDKKYFGGEEIGLLDINLGWIALFFGVIEDVVGIKVLVVDDFPRLFTWIQNFREHPAIKTNFPSHQELFDYYKQKRETMVPSQIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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