Glyma13g19080 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma13g19080

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22664599
stop:	22683479
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43900	AT	Annotation by Michelle Graham. TAIR10: myosin 2 \| chr5:17657241-17667413 REVERSE LENGTH=1565	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048467	GO-bp	Annotation by Michelle Graham. GO Biological Process: gynoecium development	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0090436	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf pavement cell development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0016459	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: myosin complex	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0017137	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Rab GTPase binding	SoyBase	N/A	ISS
GO:0030742	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP-dependent protein binding	SoyBase	N/A	ISS
KOG0160	KOG	Myosin class V heavy chain	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PF00063	PFAM	Myosin head (motor domain)	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF01843	PFAM	DIL domain	JGI		ISS
PF02736	PFAM	Myosin N-terminal SH3-like domain	JGI		ISS
UniRef100_G7KZI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI-2 n=1 Tax=Medicago truncatula RepID=G7KZI6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CBF9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CBF9 related cluster n=1 Tax=unknown RepID=UPI000233CBF9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19080

Paralog	Evidence	Comments
Glyma10g04750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g128700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g19080

Limit To All Plant Sequences

>Glyma13g19080.1   sequence type=CDS   gene model=Glyma13g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACCGCCAATCCTATAATTGGTTCCCATGTTTGGGTGGAGGATTCTCAAGTAGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAGGGAGAAGAAATCAAAGTTCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCTAGTGTTTATCATAAAGATACCGAAGCCCCCCCATGTGGAGTGGATGATATGACAAAACTTGCTTATCTACATGAACCTGGTGTCCTGGATAATCTGAGATCAAGATATGATATCAACGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAATCCTTTCATAAGGCTTCCTCATTTATACGATAGCCATATGATGGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGCCCACATCCTTTTGCTGTTGCAGATGCAGCATATAGACTTATGATTAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGGAAAACGGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGAGCTAATAATGCTTCTGAAGGTAGATCTGTTGAGCAGAAAGTCCTGGAGTCCAATCCTGTTTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGGATTTCTGGGGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGTTGTCAGATCCAGAGAGGAACTATCACTGTTTCTATATGCTCTGTGCTGCACCTCCGGAGGATATTCAGAAGTACAAATTAGGAAATCCTAGAGCATTTCATTATCTGAATCAAACAAATTGCTTTGAGTTGGAAGGGGTTGATGAGTTAAAAGAATATCAGGATACGAGGAGAGCAATGGACGTTGTTGGAATAAGTTCTGAGGAACAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTACAAAAGGGCAAGAAATTGACTCATCTGTGCCCAAAGATGAAAAATCTTGGTTTCATCTACGAACTGCTGCTGAACTTTTCATGTGTAATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATAACAAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGATTGGCTGGTGGATAAAATAAATAATTCAATTGGTCAAGACCCTGACTCAAAGTCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATCAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTTGATAATAAAGATGTTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTTGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACATTCAAAAACCATAAAAGGTTCAGCAAACCCAAGTTGGCACGTAGTGACTTCACAATTTGCCATTATGCGGGTGATGTCACGTATCAAACTGAATTGTTCCTGGACAAGAACAAAGATTATGTTGTTGCAGAACACCAGGAACTTCTTTATGCTTCCAAATGCCCCTTTGTGTCTGGTTTGTTCCCCCCTTCACCTGAGGAATCGTCCAAACAATCGAAGTTCTCTTCAATAGGTTCCCGGTTTAAGCAACAATTGCAAGCACTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGCTGTGTGAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTACAGCAACTGCGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGCTGTGCCGGGTATCCTACTAGGAAGACTTTTGATGAATTTGCAGACCGATTTGGACTTCTTGCACCTGAAGCTTTGGACGGGAGTTCTGATGAGGTCACTGCTTGCAAAAGGATTCTGGAGAAGGTTGGACTTAAGGGCTATCAGATTGGTAAAACAAAAGTGTTTCTTCGAGCTGGTCAAATGGCAGATCTAGATACTCGTAGAAGTGAGGTCTTAGGAAAGTCAGCAAGCATTATTCAGAGAAAAGTTCGTACCTATTTGGCCCGCCGTAGTTTTGTCTTGATACATTTGTCTGCTATACAGATTCAAGCTGCATGCAGAGGTCAACTTGCTCGGCAAGTTTACGAGGGATTGCAGCGGGAGGCTTCTAGTGTGAAGATTCAAAGGTATTTACGCATGCATGTTGCTAGGAAGGCATATAAAGAATTGTGTAGCTCGGCTGTTTCTATTCAGACTGGTATGCGAGGGATGGCTGCTCGTACTGAGCTACGCTTCAGGAAGCAAACTCGTGCTGCTATTGTCATTCAGAGCCACTGCCGGAAATACCTGGCTCAACATCATTTTACAAACTTAAAGAAGGCAGCAATTGCAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTACGACAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAACAAGTTGAAGACCTTACATTGAGGTTGCAGCTGGAAAAACGCCTGAGGATTGACATTGAAGAATCAAAAACACAAGAAAATGAAAAACTACAATCTGCTTTGCAAGCGATGCAACTTCAGTTTAAAGAAACTAAGTTGTTACTTAAAAAGGAGCGTGAGGCTGCAAAAAGAGAAGCTGAGAGAGCGCCTTTCATACAGGAGGTTCCTGTTGTTGACCATGCTTTGTTGGAGAAGCTCACTAGTGAAAATGAGAAACTCAAGACTTTGGTGAGTTCATTGGAAAAGAAAATTGATGAAACAGAAAAAAGATACGAAGAGGCAAACAAAGTTAGTGAAGAAAGGTTGAAGCAGGCTTTGGATGCCGAATCAAAAATAATCCAGTTGAAGACTGCTATGCAAAGACTCGAAGAGAAATTCTCAGATATGGAAACCGAAAACCAGGTTCTTCGGCAACAGTCTCTGCTAGACTCATCTGCAAAAACAGTGTCAGAACACCTTTCTACCCACATATCTGAGAAGTTGGAAAATGGTCACCATGTGGTGGAAGATCAGAAAACTTCTGAAGCACAGAATGTCACACCTGTGAAGAAGTTTGGTACAGAATCTGATGGCAAATTGAAGAGATCCTTCATTGAACGTCAACATGAGAATGTTGATGCACTTGTCAACTGTGTTATGAAAAATATTGGTTTCCATCATGGAAAGCCTGTTGCTGCATTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAGGCTGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATTTGTCTGCACTATTGTTTTTGCTCCAGCAAAGTCTAAAATCCGGTGGTGCAGCTGATGCCACTCCTGTAAAAAAACCACCAAATCCGACATCCCTCTTTGGAAGAATGACTATGGGTTTTCGTTCATCTCCTTCTTCTGCCAACCTTCCTACCCCACCATTGGACGTTGTACGCAAAGTAGAAGCTAAATATCCTGCTTTGCTTTTCAAGCAACAGCTCACAGCCTATGTGGAGAAAATATACGGTATCCTTCGGGACAACTTGAAGAAAGAATTGGCATCAATGCTTTCGTTATGTATACAGGCACCAAGAACATCCAAGGGAGTGCTACGATCTGGCCGATCCTTTGGTAAAGATTCTCCCATGGGTCACTGGCAGAGTATTATAGAATCCCTGAACACTCTCCTCTGTACTCTGAAAGAAAACTTTGTACCTCCAGTTCTTATCCAAAAGATCTTCACTCAAACATTCTCATATATTAATGTTCAACTCTTCAATAGTCTTCTTCTGCGTCGTGATTGCTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGTTGTGGTGCTGCCAAGCAAAGGAGGAGTATGCAGGTTCATCTTGGGATGAGCTTAAGCATATAAGACAAGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCAATCATGAGTGTCCAGCAGCTATACAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGAGTACTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGACTTCTCTACATCACTGCAAGAGAAGGATTTCTCTGACATGAAACCAGCGGATGAGCTGCTTGAGAATCCCGCCTTCCGATTTTTAAATGAGTTGGCAAGGGAAGCTTAG

Predicted protein sequences of Glyma13g19080

Limit To All Plant Sequences

>Glyma13g19080.1   sequence type=predicted peptide   gene model=Glyma13g19080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATANPIIGSHVWVEDSQVAWIDGEVLEVKGEEIKVLCTSGKTVVVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIRLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANNASEGRSVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEDIQKYKLGNPRAFHYLNQTNCFELEGVDELKEYQDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFTKGQEIDSSVPKDEKSWFHLRTAAELFMCNAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNKDVLDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQELLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFADRFGLLAPEALDGSSDEVTACKRILEKVGLKGYQIGKTKVFLRAGQMADLDTRRSEVLGKSASIIQRKVRTYLARRSFVLIHLSAIQIQAACRGQLARQVYEGLQREASSVKIQRYLRMHVARKAYKELCSSAVSIQTGMRGMAARTELRFRKQTRAAIVIQSHCRKYLAQHHFTNLKKAAIATQCAWRGKVARRELRQLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRIDIEESKTQENEKLQSALQAMQLQFKETKLLLKKEREAAKREAERAPFIQEVPVVDHALLEKLTSENEKLKTLVSSLEKKIDETEKRYEEANKVSEERLKQALDAESKIIQLKTAMQRLEEKFSDMETENQVLRQQSLLDSSAKTVSEHLSTHISEKLENGHHVVEDQKTSEAQNVTPVKKFGTESDGKLKRSFIERQHENVDALVNCVMKNIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNLSALLFLLQQSLKSGGAADATPVKKPPNPTSLFGRMTMGFRSSPSSANLPTPPLDVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASMLSLCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIFTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDFSTSLQEKDFSDMKPADELLENPAFRFLNELAREA*

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