Glyma13g19040 - SoyBase

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Report for Sequence Feature Glyma13g19040

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22635725
stop:	22642563
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g19040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28706	AT	Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein \| chr4:14167805-14170619 FORWARD LENGTH=404	SoyBase	E_val: 6.00E-160	ISS
GO:0006014	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-ribose metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004747	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribokinase activity	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2855	KOG	Ribokinase	JGI		ISS
PTHR10584	Panther	SUGAR KINASE RELATED	JGI		ISS
PTHR10584:SF21	Panther	PFKB CARBOHYDRATE KINASE-RELATED	JGI		ISS
PF00294	PFAM	pfkB family carbohydrate kinase	JGI		ISS
UniRef100_G7KZI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 5-dehydro-2-deoxygluconokinase n=2 Tax=Medicago truncatula RepID=G7KZI2_MEDTR	SoyBase	E_val: 1.00E-169	ISS
UniRef100_I1LYQ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYQ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g19040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g19040

Paralog	Evidence	Comments
Glyma10g04710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g19040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g128300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g19040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g19040

Limit To All Plant Sequences

>Glyma13g19040.3   sequence type=transcript   gene model=Glyma13g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAATATTAGGTAACCAAACTTTGTTGGTAAAATCAATTTTATAAAATAAATTTACACGTGCTTCCCACGCAAACATAAAAAGAAAATACAAATGAATAGCAAGGGGTGACATTGATTTTTCAGAAGTCAAGTTTAGTTGGCATGGCATGAGCAATAGCAAACCAATAAAGAAGCTTTGCTAAGTGGCGACAATGATTACAACCCCTTCTTCTGTTCTCTTATTACTTTCTTCATCATCACGAGGCAGAAGAAAATAAACTAAAACTTTGGAACCCAAATGATGTCTTCCGAATCTGTTCTTCCTCTCCCCGAAAATCCCATCATTGTGGGGTTTGGTGGGGTTGGAGTCGATTTTCTTGCAGTAGTGCCATCTTTTCCTAAACCCGACTCCAAGATCAGAACCACTGAATTCACGGTCCAAGGTGGTGGAAATAATGGAAATACTATGACATGTGCTGCCCGTTTGGGCTTAAAGCCAAGAATAATTTCTAAGGTTTCAAATGATGGTCCAGGTAAGACTATGCTGGAGGAACTAGAAGCTGAAGGGGTGGATACCTCTTTTTTTGTGGTCTCGAAGGAAGGGACTTCACCATTTAGCTACATCATCGTTGACAACCAATCGAAAACAAGGACTTGTATATTCACTCCAGGATATCCTGAAATGGTCCCTCAAGATCTTTCACGAGCCAATTTGTTATCTGCACTGGATGGAGCAAGAGTGGTCTATTTTGATGCAAGGATGCCTGACAATGCTCTTGTCATCGCTCAAGAGGCATTTCACCAGAATATATCTATCTTAATTGATGCGGAAAGGCCTAGGGAAGGATTGAATGACCTCCTGAGTTTGGCTGATTATGTTGTATGTTCAGAAAAATTTCCACAGGCCTGGACAGAGGCATCATCCATTCCAAGAGCACTAGTTTCAATTATTTTAAGATTGCCAAGACTTAAATTTGCGATTGTAACTTTGGGAAAAGATGGCTGCATAATGCTTGAGAAATGTGTGGATGATGAGGGTTCTCACATAGAAGAAATGGATGTAGACAGCTGTTTTGTATCATTAACAACGAGAAAGGAAGATAGCACAGCCATGCCAACTTGCATACCCTCACCTGTTACAAAATTAAGAGCCGAAGGGATAGAAGAATCTGTGTGTGGGAGGTTATATTATGGGACATCTGAAAAGATTCCACCATCAGAGCTTGTTGATACAACTGGTGCTGGGGATGCATTTGTTGGAGCTGTTTTATATTGCAGCTGCCAATTGTAGAGCTCTTGGAGCTCGCAGAGGTCTTCCATACCGCACTAACCCACGCCTGGCATCCTTTACTGAGTAGAGTCCTAAATTGTTCATCAAAATTTCCAGTGTAGTATGCAAGAAACAAGGCTTCAGCATACAAATTGTGCTGTTGAATCCCAGTTTATAATTAATCATTTAGCCCAAATGATTGTATTTTTATGTTTTTAGTAGCTAATTGTATAATTTGAGTGTGATAGATTTGTAGGACAACATGTTAGTTGTTGGGAAAAATTACCCAAATTTTCTTTGAATCAGATTTTGTAAAAGGCTAAATAAATGTTGAATAACAACAAACACAGTTGATAAGAGAGTTCAGCCAATTATACATATGTTTTATGGTTGCCAATGAAGAGATAGTGAAGATCAATGTGTTTTGTTCTAGAATGAAATGTCGAATTCTTTGCTGAATGTATCGCACTCTGATTATCACTATACAAAAACACTCTTCACCTAGATGAATCTTAGCTCCATTAACAATGCTTATGTTACTGCTACATACTCAACCTCCAAAGCGTATAAAGCAATGTTCTTTTGTATTGTTGACATCCAACTATCAGTTGTAGTTCTCCGACAATTAAATGTA

Coding sequences of Glyma13g19040

Limit To All Plant Sequences

>Glyma13g19040.1   sequence type=CDS   gene model=Glyma13g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCTTCCGAATCTGTTCTTCCTCTCCCCGAAAATCCCATCATTGTGGGGTTTGGTGGGGTTGGAGTCGATTTTCTTGCAGTAGTGCCATCTTTTCCTAAACCCGACTCCAAGATCAGAACCACTGAATTCACGGTCCAAGGTGGTGGAAATAATGGAAATACTATGACATGTGCTGCCCGTTTGGGCTTAAAGCCAAGAATAATTTCTAAGGTTTCAAATGATGGTCCAGGTAAGACTATGCTGGAGGAACTAGAAGCTGAAGGGGTGGATACCTCTTTTTTTGTGGTCTCGAAGGAAGGGACTTCACCATTTAGCTACATCATCGTTGACAACCAATCGAAAACAAGGACTTGTATATTCACTCCAGGATATCCTGAAATGGTCCCTCAAGATCTTTCACGAGCCAATTTGTTATCTGCACTGGATGGAGCAAGAGTGGTCTATTTTGATGCAAGGATGCCTGACAATGCTCTTGTCATCGCTCAAGAGGCATTTCACCAGAATATATCTATCTTAATTGATGCGGAAAGGCCTAGGGAAGGATTGAATGACCTCCTGAGTTTGGCTGATTATGTTGTATGTTCAGAAAAATTTCCACAGGCCTGGACAGAGGCATCATCCATTCCAAGAGCACTAGTTTCAATTATTTTAAGATTGCCAAGACTTAAATTTGCGATTGTAACTTTGGGAAAAGATGGCTGCATAATGCTTGAGAAATGTGTGGATGATGAGGGTTCTCACATAGAAGAAATGGATGTAGACAGCTGTTTTGTATCATTAACAACGAGAAAGGAAGATAGCACAGCCATGCCAACTTGCATACCCTCACCTGTTACAAAATTAAGAGCCGAAGGGATAGAAGAATCTGTGTGTGGGAGGTTATATTATGGGACATCTGAAAAGATTCCACCATCAGAGCTTGTTGATACAACTGGTGCTGGGGATGCATTTGTTGGAGCTGTTTTATATTCAATCTGTGCCAACTTATCACTAGAGAAAATGTTGCCATTTGCTTCTTATGTGGCAGCTGCCAATTGTAGAGCTCTTGGAGCTCGCAGAGGTCTTCCATACCGCACTAACCCACGCCTGGCATCCTTTACTGAGTAG

>Glyma13g19040.3   sequence type=CDS   gene model=Glyma13g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCTTCCGAATCTGTTCTTCCTCTCCCCGAAAATCCCATCATTGTGGGGTTTGGTGGGGTTGGAGTCGATTTTCTTGCAGTAGTGCCATCTTTTCCTAAACCCGACTCCAAGATCAGAACCACTGAATTCACGGTCCAAGGTGGTGGAAATAATGGAAATACTATGACATGTGCTGCCCGTTTGGGCTTAAAGCCAAGAATAATTTCTAAGGTTTCAAATGATGGTCCAGGTAAGACTATGCTGGAGGAACTAGAAGCTGAAGGGGTGGATACCTCTTTTTTTGTGGTCTCGAAGGAAGGGACTTCACCATTTAGCTACATCATCGTTGACAACCAATCGAAAACAAGGACTTGTATATTCACTCCAGGATATCCTGAAATGGTCCCTCAAGATCTTTCACGAGCCAATTTGTTATCTGCACTGGATGGAGCAAGAGTGGTCTATTTTGATGCAAGGATGCCTGACAATGCTCTTGTCATCGCTCAAGAGGCATTTCACCAGAATATATCTATCTTAATTGATGCGGAAAGGCCTAGGGAAGGATTGAATGACCTCCTGAGTTTGGCTGATTATGTTGTATGTTCAGAAAAATTTCCACAGGCCTGGACAGAGGCATCATCCATTCCAAGAGCACTAGTTTCAATTATTTTAAGATTGCCAAGACTTAAATTTGCGATTGTAACTTTGGGAAAAGATGGCTGCATAATGCTTGAGAAATGTGTGGATGATGAGGGTTCTCACATAGAAGAAATGGATGTAGACAGCTGTTTTGTATCATTAACAACGAGAAAGGAAGATAGCACAGCCATGCCAACTTGCATACCCTCACCTGTTACAAAATTAAGAGCCGAAGGGATAGAAGAATCTGTGTGTGGGAGGTTATATTATGGGACATCTGAAAAGATTCCACCATCAGAGCTTGTTGATACAACTGGTGCTGGGGATGCATTTGTTGGAGCTGTTTTATATTGCAGCTGCCAATTGTAG

Predicted protein sequences of Glyma13g19040

Limit To All Plant Sequences

>Glyma13g19040.1   sequence type=predicted peptide   gene model=Glyma13g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSSESVLPLPENPIIVGFGGVGVDFLAVVPSFPKPDSKIRTTEFTVQGGGNNGNTMTCAARLGLKPRIISKVSNDGPGKTMLEELEAEGVDTSFFVVSKEGTSPFSYIIVDNQSKTRTCIFTPGYPEMVPQDLSRANLLSALDGARVVYFDARMPDNALVIAQEAFHQNISILIDAERPREGLNDLLSLADYVVCSEKFPQAWTEASSIPRALVSIILRLPRLKFAIVTLGKDGCIMLEKCVDDEGSHIEEMDVDSCFVSLTTRKEDSTAMPTCIPSPVTKLRAEGIEESVCGRLYYGTSEKIPPSELVDTTGAGDAFVGAVLYSICANLSLEKMLPFASYVAAANCRALGARRGLPYRTNPRLASFTE*

>Glyma13g19040.3   sequence type=predicted peptide   gene model=Glyma13g19040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSSESVLPLPENPIIVGFGGVGVDFLAVVPSFPKPDSKIRTTEFTVQGGGNNGNTMTCAARLGLKPRIISKVSNDGPGKTMLEELEAEGVDTSFFVVSKEGTSPFSYIIVDNQSKTRTCIFTPGYPEMVPQDLSRANLLSALDGARVVYFDARMPDNALVIAQEAFHQNISILIDAERPREGLNDLLSLADYVVCSEKFPQAWTEASSIPRALVSIILRLPRLKFAIVTLGKDGCIMLEKCVDDEGSHIEEMDVDSCFVSLTTRKEDSTAMPTCIPSPVTKLRAEGIEESVCGRLYYGTSEKIPPSELVDTTGAGDAFVGAVLYCSCQL*

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