Glyma13g18990 - SoyBase

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Report for Sequence Feature Glyma13g18990

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22594776
stop:	22599140
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04130	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:1073465-1075374 FORWARD LENGTH=360	SoyBase	E_val: 6.00E-172	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0051879	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Hsp90 protein binding	SoyBase	N/A	ISS
KOG0551	KOG	Hsp90 co-chaperone CNS1 (contains TPR repeats)	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF125	Panther	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN	JGI		ISS
UniRef100_D7KDB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDB5_ARALL	SoyBase	E_val: 6.00E-170	ISS
UniRef100_I1LYQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYQ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g18990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18990

Paralog	Evidence	Comments
Glyma10g04660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g127800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g18990

Limit To All Plant Sequences

>Glyma13g18990.1   sequence type=CDS   gene model=Glyma13g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAACCGAGAAGGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCAGCCTTTGAATTCAAGGAAAAGGGTAATCAATATGTGAAGATGGGCAAGAAGCATTACTCTGATGCCATTGATTACTACACGAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTCTTTGCAAATAGAGCCCATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTAACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATAAAGGCAATTTATAGAGCTGCGAAAGCTTCTCTTTCACTAAACATGTTGGCTGAAGCAAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGACCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCAGATCGGTCTCAAGATATCAGAGAAGGAAAAGCATGAGGCTGAAGCCTCCAAGGCTGTCGCGGAGACAAAGAAACTTGTGTCTGCGATTGAAAATAGAGGCTTGAAGATTGGAAAGGCAATGTATCTAGAACTTACTGGACTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGATATCCTTTTCTCTATCAAACATATTTTCAGAAGATCAGCCGTTGTCATGGGATGTTGAAAACAACTACAAACGTGAATTTATTGAATTATACTATGAGACTGGTTCTGGACTTTGTCTATCAAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAGTTGAGGATTATAAGCAACACATGGGTTCCCCTAAATGGATCAAAGTGAATGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA

Predicted protein sequences of Glyma13g18990

Limit To All Plant Sequences

>Glyma13g18990.1   sequence type=predicted peptide   gene model=Glyma13g18990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALWMEKGSEPLTETEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDYYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRAAKASLSLNMLAEAREYCLKGLQFDPNNEDLKKLDRQIGLKISEKEKHEAEASKAVAETKKLVSAIENRGLKIGKAMYLELTGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMISFSLSNIFSEDQPLSWDVENNYKREFIELYYETGSGLCLSKEKLLHCLLEGTAAAHREGVGDEEKDTVEDYKQHMGSPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKRSSFYGKFKAGKWAPPSI*

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