SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20360 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG2865 | KOG | NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit | JGI | ISS | |
| PTHR12126 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED | JGI | ISS | |
| PTHR12126:SF1 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE 1 ALPHA SUBUNIT | JGI | ISS | |
| PF05368 | PFAM | NmrA-like family | JGI | ISS | |
| UniRef100_B9SKL5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH-ubiquinone oxidoreductase 39 kD subunit, putative n=1 Tax=Ricinus communis RepID=B9SKL5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYP7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYP7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma13g18950 not represented in the dataset |
Glyma13g18950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g127400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma13g18950.2 sequence type=transcript gene model=Glyma13g18950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGCGTGCACCCTCCACAGTCCCAATTGCATTTGTGTTGAGTTTCTTCTTCTGTTGCGTTGTGTGTGAGTGTGGGCACGGTAAGATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAAGATTCTTTGGATGTTTGATCCTGAATCATTTTTCTGTCTTGCTTGTACTACCACCATTTAATTTCACTATTTAAAAAAATCTGAAATGCTTTTATATCTTCCTTTCATAATCTGTAGAATATGTGATCATGGTTGATGATGATAATAAAATCCAGATACTTGTTGATTTCCGAACGTAGACGTCTTTGGATCAAATTCAATGTCATTCTATACGATATAAAAAAATGACACATTTCCAATGATGTGTTCTCTTTTATGCACTTGTTTAGTCCTCGGCAGGTTCAAAC
>Glyma13g18950.1 sequence type=CDS gene model=Glyma13g18950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGGTAAGTTTCTTTATTTGATCATAAGGTCATTTTTTTTCTCGAGACATTATAGAACTGTGTCTCTTATGTCCCACATTTTTTGTTTGATGAAATTTGCAGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAA >Glyma13g18950.2 sequence type=CDS gene model=Glyma13g18950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGACCATTGCTAGGCGCTTAGGGCAGCAATCGCTGAGGCCATCGACGTCGCTCAAGTCCATCTATCCAATTTCCGATCACCATTATGGAATGGATCACGAGCGTTACGTTTCTACCCTCGCCACCAAGGGAGTTGGTCACCTCGTTCGTAAGGGCACTGGTGGACGATCCTCCGTCAGTGGCATTATTGCTACAGTATTTGGGGCAACTGGATTCTTAGGTCGTTATGTTGTCCAACAACTTGCTAAAATGGGATCTCAAGTCCTAGTTCCTTTCCGAGGCTCTGAAGATAATCCCCGTCATCTCAAATTGATGGGGGATTTGGGACAGATTGTACCCATGAAATACAATCCAAGGGATGAAAGTTCAGTAAAAGCTGTGATGGCTAAGGCCAATGTTGTTATCAACCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTTTGAAGAAGTGCACTATCACATGGCTGAGCAACTAGCAAAGATTTCCAAAGAGCATGGTGGTATCCTGAGATTTATTCAAGTTTCTTGTTTAGGTGCATCTCCTTCATCTCCATCTAGGATGCTCAGAACTAAATCAGCTGCTGAGGAAATGATTTTAAGGGAACTACCTGAGGCCACAATCTTGAAACCTGCTGTAATGATTGGTACAGAGGATCGGATTTTGAATCCATGGGCTCATTTTGCTAAAAAGTATGGCTTTCTTCCGTTGTTTGGAGATGGGAGCACAAAGATCCAACCTGTTTATGTTATTGATGTTGCTGCTGCACTCACTTCACTCTTGAAGGATGATGGCACTAGCATGGGAAAAATTTATGAACTGGGTGGTCCAGAGATCTTTACTGTGCATGAATTGGCAGACGTTATGTTTGATACAATTCGAGAATGGCCTCGATATGTGAAGGTGCCTTTCCCCATTGCAAAGGCATTGGCAACACCAAGAGAAATATTACTAAACAAGGTCCCCTTTCCACTACCTGTTCCTGAGATATTAAATCTGGATAAGATCCAGGCTTTGACTACAGATACCGTTGTTTCAGAAAATGCTTTGACTTTCAATGATCTTGGAATTGTTCCTCACAAGCTGAAGGGATACCCTATTGAGTTTCTTATCTCATATAGGAAAGGAGGCCCACAATTTGGTTCTACTATCAGTGAAAGGGTCACTCCAGATTCTTGGCCGTAA
>Glyma13g18950.1 sequence type=predicted peptide gene model=Glyma13g18950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTIARRLGQQSLRPSTSLKSIYPISDHHYGMDHERYVSTLATKGVGHLVRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDNPRHLKLMGDLGQIVPMKYNPRDESSVKAVMAKANVVINLIGRDYETRNYSFEEVHYHMAEQLAKISKEHGGILRFIQVSCLGASPSSPSRMLRTKSAAEEMILRELPEATILKPAVMIGTEDRILNPWAHFAKKYGFLPLFGDGSTKIQPVYVIDVAAALTSLLKDDGTSMGKIYELGGPEIFTVHELADVMFDTIREWPRYVKVPFPIAKALATPREILLNKVPFPLPVPEILNLDKIQALTTDTVVSENGKFLYLIIRSFFFSRHYRTVSLMSHIFCLMKFAALTFNDLGIVPHKLKGYPIEFLISYRKGGPQFGSTISERVTPDSWP* >Glyma13g18950.2 sequence type=predicted peptide gene model=Glyma13g18950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTIARRLGQQSLRPSTSLKSIYPISDHHYGMDHERYVSTLATKGVGHLVRKGTGGRSSVSGIIATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDNPRHLKLMGDLGQIVPMKYNPRDESSVKAVMAKANVVINLIGRDYETRNYSFEEVHYHMAEQLAKISKEHGGILRFIQVSCLGASPSSPSRMLRTKSAAEEMILRELPEATILKPAVMIGTEDRILNPWAHFAKKYGFLPLFGDGSTKIQPVYVIDVAAALTSLLKDDGTSMGKIYELGGPEIFTVHELADVMFDTIREWPRYVKVPFPIAKALATPREILLNKVPFPLPVPEILNLDKIQALTTDTVVSENALTFNDLGIVPHKLKGYPIEFLISYRKGGPQFGSTISERVTPDSWP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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