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Report for Sequence Feature Glyma13g18930

Feature Type:gene_model
Chromosome:Gm13
Start:22539302
stop:22541308
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma13g18930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28660AT Annotation by Michelle Graham. TAIR10: photosystem II reaction center PSB28 protein | chr4:14150008-14150933 FORWARD LENGTH=183 SoyBaseE_val: 8.00E-69ISS
GO:0000038GO-bp Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0042335GO-bp Annotation by Michelle Graham. GO Biological Process: cuticle development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009523GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009539GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem II reaction center SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: oxygen evolving complex SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03912PFAM Psb28 protein JGI ISS
UniRef100_C6SZM2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZM2_SOYBN SoyBaseE_val: 1.00E-129ISS
UniRef100_I1L8H7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Photosystem II reaction center psb28 protein n=1 Tax=Glycine max RepID=I1L8H7_SOYBN SoyBaseE_val: 2.00E-123ISS

Expression Patterns of Glyma13g18930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18930
ParalogEvidenceComments
Glyma10g04630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g127200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma13g18930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma13g18930
>Glyma13g18930.2   sequence type=CDS   gene model=Glyma13g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTCTTTGTTACACACCAAGCATTTTTTTTTGGACCACAAATTCGCACTCCTTTATGCTACAGAGAGAGAGGTGCTGTGAACTGCATCTCTCTCTCTCTCTCTCTCTCTCTCCTGCTGGAAATGGCAACTCTGCACTCTCTTGCATTGTCCTCTCCACTCTCCAACTCACTTCAGAAGCCACGCTCATGTGCAGTCCCATCTTCAATTGTTCATCAAAGTACAAACTCTTCATTCAATGGTCAAACATTACACCTGCCGTGTTTAAGGTTACCTGTGCTAAGACAAAATACTCCCATGCACATGCCTGTTATCATGATGGTCAAACCAAAAATACAGTTCATCCAGGGAACTGATGAACAAACAATACCCGATGTGAGGCTGACCAAATCAAGGGATGGAACAAATGGCATGGCTATCTTCACATTTGATCAACCCTCAGTTTTCGATTCTTCGGGTGAAATAGGCGATATCACTGGATTTTATATGATTGATGAGGAAGGGGTCCTTCAGTCAGTTGATGTAAGTGCTAAATTTGTCAATGGGAAGCCCTCAATAATTGAAGCCAAGTATGTAATGCGGAGTCCACGGGACTGGGATAGATTCATGAGATTCATGGAGCGATACTCAAATGCAAATGGTTTGCAATTCATCAAAAAATGA
Predicted protein sequences of Glyma13g18930
>Glyma13g18930.2   sequence type=predicted peptide   gene model=Glyma13g18930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVFVTHQAFFFGPQIRTPLCYRERGAVNCISLSLSLSLLLEMATLHSLALSSPLSNSLQKPRSCAVPSSIVHQSTNSSFNGQTLHLPCLRLPVLRQNTPMHMPVIMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDITGFYMIDEEGVLQSVDVSAKFVNGKPSIIEAKYVMRSPRDWDRFMRFMERYSNANGLQFIKK*






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