Glyma13g18840 - SoyBase

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Report for Sequence Feature Glyma13g18840

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22492627
stop:	22493714
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44000	AT	Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein \| chr5:17702231-17703934 REVERSE LENGTH=399	SoyBase	E_val: 2.00E-113	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG2903	KOG	Predicted glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF67	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
UniRef100_B9SKN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione transferase, putative n=1 Tax=Ricinus communis RepID=B9SKN5_RICCO	SoyBase	E_val: 1.00E-115	ISS
UniRef100_I1LYN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LYN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g18840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18840

Paralog	Evidence	Comments
Glyma10g04570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g126500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma13g18840

Limit To All Plant Sequences

>Glyma13g18840.2   sequence type=CDS   gene model=Glyma13g18840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCACGCTGAAGGGGTTAGAAGACGCCGTGCCCGTCTCGGTTGCTTCGCCGGGCCTCGACGGGTCGTGGAAGTTCAAACGGGCCGGTGGGCCCGACACGGGTACAATTGCTCCATGTTTGGATAAGGCGAATGCGTGCAGAACGTTGAAGCAAATTTATAGGCTTCGGAGAGGAGGGTACGATGGAAGATCTACAGTGCCAATGCTGTGGGATAAGGCTTCAAAAGACGTTGTCTGCAACGAGAGCTACGATATAATTCACTTGTTCAATTCCGAGTTAAATAGCGTAGCTCAAAACCCTGGCTTGGATCTCTCACCGCCTCAATTGAAGAAACGGATTGGGGAATGGAATCAAATCATATATCCAAATTCCAAACGTCAACAACGGGGTTTATATAGTCAAGAAGGTTATGATAAAGAGTTGAATGATTTGTTTAGTACACTGGACAAGTTGGAGGTTCACTTGGCTAATTCCGGATACTTGTGTGGAGACACATTGACCCTTGTTGATATATGCCTATTTACTACTCTGGTTAGGTTTGATCTTGCGTATAACGTTCTACTTAATTGCACCAAGAAGAAGCTGTGTGAGTACACCAATCTACATGCCTACTTGCGTGACATTTATCAGATTCCGAAGGTGGCGGCTACTTGCAATTTTACAGATATTATGGATGGTTACTACAAAATCCTATTTCCTCTGAATCCAGGGAGCATTAGACCGGTCATGCCTTCTACTTGTGAGCATGAAAGCCTTTGCAGGCCTCATGCAAGGGAATCCCTGTCATCAGCTACACTAGCATTTGTAAAATAA

Predicted protein sequences of Glyma13g18840

Limit To All Plant Sequences

>Glyma13g18840.2   sequence type=predicted peptide   gene model=Glyma13g18840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTLKGLEDAVPVSVASPGLDGSWKFKRAGGPDTGTIAPCLDKANACRTLKQIYRLRRGGYDGRSTVPMLWDKASKDVVCNESYDIIHLFNSELNSVAQNPGLDLSPPQLKKRIGEWNQIIYPNSKRQQRGLYSQEGYDKELNDLFSTLDKLEVHLANSGYLCGDTLTLVDICLFTTLVRFDLAYNVLLNCTKKKLCEYTNLHAYLRDIYQIPKVAATCNFTDIMDGYYKILFPLNPGSIRPVMPSTCEHESLCRPHARESLSSATLAFVK*

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