Glyma13g18720 - SoyBase

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Report for Sequence Feature Glyma13g18720

Feature Type:	gene_model
Chromosome:	Gm13
Start:	22380222
stop:	22382214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g18720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20430	AT	Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 6 \| chr2:8808667-8809781 REVERSE LENGTH=212	SoyBase	E_val: 7.00E-28	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_I1LYM9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYM9_SOYBN	SoyBase	E_val: 8.00E-137	ISS
UniRef100_Q1PF35	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ROP-interactive CRIB motif-containing protein 6 n=3 Tax=Arabidopsis thaliana RepID=Q1PF35_ARATH	SoyBase	E_val: 3.00E-25	ISS

Expression Patterns of Glyma13g18720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g18720

Paralog	Evidence	Comments
Glyma10g04460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g18720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g125300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g18720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g18720

Limit To All Plant Sequences

>Glyma13g18720.2   sequence type=transcript   gene model=Glyma13g18720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATTTGTCAAAAACTGCCCCAAGTTTTTGAACCATTATTATTCTCTTTCTTCAATTGCCAAAAGAAACAGAAAACCATAACCATATTTGCACGCACTAAGAAGAAACCAAAAACACACACCTCTAATTATCCTTTGATGGGTTCTCTCAGGACCATTTCTTCAATTCCAATGCACACATATTGTTGAATGTTCAACAAAAGAAAATTTCGTTGTGGATCTCAAAGTCAATGTTGGTTTTACATTAGGTTATCTAATTATAAGTACAACTTTGTAAATTGCCAAAAGAGAATTCGAACGCATCGCATTTGTTGAGTTGAGCATGTCCGGCAACAAGGTGAAGGGCATTCTTAGATACATATCTCAATTATTTGAGACTGAAAAAGAACAAGACATACAGATTGGATTTCCCACGGATGTAGAGCACGTGACCCATATAGGGTGGGATGGACCCTCTGTAAATTATCCTAGCTGGCCTTTGGGGGGCTTGTTGTGACTGTTTTTCAGATGAGCCAATTTAAAACTGCTCCAGGATTTTCATCAGCACCTCTAGATGTTCAAAATAAAGGACAGGACAATGCCAAATGGGTCTCCGAAGATTCAAGGAGAAGAAGTACTCGGGACTTGCCGGATTTACCCAAGGCATCTAAAAGGAAATCAAACAAACCAAGGCAATCAAGAAAGTCATCGAACAAACCCAAGGAAGAATCCACCCTGACCCGAATACCCATACCCGTATCCACGGATCACCTGCTTCCAACCCTACCCGTATCCGATATTCCGAAAAAGTCTCGTCGCCAGAAGACAAAGGAGAATTCTAGTGGTGGGTCATCCAAATTGAGATCCAAAGCCCAACCCGCTTCAGAATCTGGATCCCCGACCCAATTCAAGTCTAGGATAAACCAAGGTCCTTTGAAGAAAATGGACACGGTATCTTAAAATAATGTTGCTCTATTTTTATCCTATTAGTTAGACTGTTGTATAGATATAATTCTTGAAACTAGAACACTTCCTTCCCCTCCCCCCCCTTTTTTTCTACTCGATTTTTAATATTTATTCATGTCATTTTCTTAACATGATCATTTTTTTTGTTCTTTTATATAGAGTCTGGTATCATTTACCAATTGCTAATATGTAATTACAAGACTTCCATTTTGATAGAAAGATTATACATATGAAAAATAAAGCATATCCATA

Coding sequences of Glyma13g18720

Limit To All Plant Sequences

>Glyma13g18720.1   sequence type=CDS   gene model=Glyma13g18720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGCAACAAGGTGAAGGGCATTCTTAGATACATATCTCAATTATTTGAGACTGAAAAAGAACAAGACATACAGATTGGATTTCCCACGGATGTAGAGCACGTGACCCATATAGGGTGGGATGGACCCTCTGTAAATTATCCTAGCTGGATGAGCCAATTTAAAACTGCTCCAGGATTTTCATCAGCACCTCTAGATGTTCAAAATAAAGGACAGGACAATGCCAAATGGGTCTCCGAAGATTCAAGGAGAAGAAGTACTCGGGACTTGCCGGATTTACCCAAGGCATCTAAAAGGAAATCAAACAAACCAAGGCAATCAAGAAAGTCATCGAACAAACCCAAGGAAGAATCCACCCTGACCCGAATACCCATACCCGTATCCACGGATCACCTGCTTCCAACCCTACCCGTATCCGATATTCCGAAAAAGTCTCGTCGCCAGAAGACAAAGGAGAATTCTAGTGGTGGGTCATCCAAATTGAGATCCAAAGCCCAACCCGCTTCAGAATCTGGATCCCCGACCCAATTCAAGTCTAGGATAAACCAAGGTCCTTTGAAGAAAATGGACACGGTATCTTAA

>Glyma13g18720.2   sequence type=CDS   gene model=Glyma13g18720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCAATTTAAAACTGCTCCAGGATTTTCATCAGCACCTCTAGATGTTCAAAATAAAGGACAGGACAATGCCAAATGGGTCTCCGAAGATTCAAGGAGAAGAAGTACTCGGGACTTGCCGGATTTACCCAAGGCATCTAAAAGGAAATCAAACAAACCAAGGCAATCAAGAAAGTCATCGAACAAACCCAAGGAAGAATCCACCCTGACCCGAATACCCATACCCGTATCCACGGATCACCTGCTTCCAACCCTACCCGTATCCGATATTCCGAAAAAGTCTCGTCGCCAGAAGACAAAGGAGAATTCTAGTGGTGGGTCATCCAAATTGAGATCCAAAGCCCAACCCGCTTCAGAATCTGGATCCCCGACCCAATTCAAGTCTAGGATAAACCAAGGTCCTTTGAAGAAAATGGACACGGTATCTTAA

Predicted protein sequences of Glyma13g18720

Limit To All Plant Sequences

>Glyma13g18720.1   sequence type=predicted peptide   gene model=Glyma13g18720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGNKVKGILRYISQLFETEKEQDIQIGFPTDVEHVTHIGWDGPSVNYPSWMSQFKTAPGFSSAPLDVQNKGQDNAKWVSEDSRRRSTRDLPDLPKASKRKSNKPRQSRKSSNKPKEESTLTRIPIPVSTDHLLPTLPVSDIPKKSRRQKTKENSSGGSSKLRSKAQPASESGSPTQFKSRINQGPLKKMDTVS*

>Glyma13g18720.2   sequence type=predicted peptide   gene model=Glyma13g18720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQFKTAPGFSSAPLDVQNKGQDNAKWVSEDSRRRSTRDLPDLPKASKRKSNKPRQSRKSSNKPKEESTLTRIPIPVSTDHLLPTLPVSDIPKKSRRQKTKENSSGGSSKLRSKAQPASESGSPTQFKSRINQGPLKKMDTVS*

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